genome.fa.s8117.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008117.1 Hibiscus syriacus cultivar Beakdansim tig00110656_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1567030

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 808 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1408221--1408573	126	2.7	124	81	7	298	37	15	11	34	1.85
1410665--1410716	3	17.3	3	87	0	68	63	0	0	36	0.95
1417257--1417291	17	2.1	17	100	0	70	60	5	11	22	1.52
1419786--1419872	35	2.5	34	77	18	90	54	9	9	27	1.63
1422223--1422264	17	2.4	19	80	15	54	64	2	0	33	1.07
1424665--1424707	23	1.9	22	90	4	68	72	2	0	25	0.97
1425910--1425960	19	2.6	20	90	3	77	43	23	17	15	1.88
1425910--1426214	20	14.6	20	73	12	130	39	19	22	18	1.92
1426014--1426185	40	4.2	40	82	6	191	36	16	25	20	1.94
1426055--1426174	63	1.9	63	89	0	186	35	16	26	20	1.94
1426014--1426172	83	1.9	83	93	0	273	35	16	26	20	1.94
1426158--1426212	27	2.0	27	85	0	74	41	20	16	21	1.90
1426302--1426345	6	7.5	6	97	2	81	31	52	15	0	1.44
1426954--1427051	21	4.8	20	76	6	79	38	22	17	21	1.93
1427018--1427247	20	11.5	20	81	5	232	36	24	18	19	1.94
1427929--1427975	24	2.0	24	87	8	69	25	14	21	38	1.92
1428148--1428172	12	2.1	12	100	0	50	72	0	28	0	0.86
1430437--1430537	33	3.0	33	85	8	141	46	18	21	12	1.83
1430504--1430581	14	4.8	15	71	22	52	43	19	24	12	1.86
1430482--1430600	51	2.3	52	92	2	204	44	17	22	15	1.86
1430590--1430706	53	2.2	53	98	1	227	13	23	17	44	1.85
1430609--1430706	19	5.4	19	84	13	143	14	22	17	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1430822--1430848	14	1.9	14	100	0	54	37	22	0	40	1.54
1432750--1432837	19	4.6	19	70	23	67	46	21	18	13	1.83
1432833--1432942	19	6.5	19	69	23	84	8	17	28	46	1.76
1432833--1432906	33	2.2	33	92	4	123	8	17	28	45	1.77
1433005--1433375	91	4.1	94	93	5	629	45	19	12	22	1.84
1434889--1434953	21	3.1	21	77	4	87	47	15	24	12	1.79
1434889--1435002	19	6.1	19	72	15	94	45	18	23	12	1.83
1435014--1435070	14	3.7	14	75	20	60	8	24	22	43	1.81
1434998--1435078	33	2.5	33	95	0	144	8	22	22	46	1.78
1435055--1435127	21	3.5	21	83	3	103	10	24	16	47	1.78
1435209--1435279	33	2.2	33	92	0	115	47	18	22	11	1.80
1435459--1435513	22	2.5	22	81	0	74	20	16	40	23	1.91
1435660--1435832	20	8.6	20	81	6	199	20	19	26	34	1.96
1435660--1435832	60	2.9	60	82	1	231	20	19	26	34	1.96
1436288--1436325	6	6.5	6	96	3	69	0	15	52	31	1.43
1436392--1436420	14	2.1	14	100	0	58	20	13	0	65	1.26
1436416--1436541	20	6.2	20	84	5	144	20	25	16	37	1.93
1436426--1436562	43	3.3	41	83	6	159	20	24	17	37	1.94
1436426--1436562	63	2.2	61	80	10	143	20	24	17	37	1.94
1436578--1436629	20	2.6	20	90	0	77	13	17	15	53	1.72
1436616--1436666	19	2.6	20	90	3	77	15	17	23	43	1.88
1437511--1437535	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1443556--1443612	7	8.0	7	81	11	62	80	0	17	1	0.79
1444773--1444815	2	21.5	2	90	9	70	48	2	0	48	1.14
1445775--1445830	16	3.5	16	77	18	55	30	3	0	66	1.09
1447580--1447657	28	2.8	28	90	3	113	21	21	20	35	1.96
1448434--1448468	18	1.9	18	88	0	52	20	31	31	17	1.95
1454353--1454386	16	2.1	17	88	5	52	44	20	0	35	1.52
1470767--1470795	2	14.5	2	100	0	58	51	0	0	48	1.00
1471395--1471438	12	3.8	12	90	3	63	11	9	47	31	1.71
1471393--1471438	24	2.0	24	91	4	76	10	10	47	30	1.73
1471461--1471516	24	2.3	25	76	17	64	44	0	0	55	0.99
1471621--1471657	6	6.2	6	93	0	65	0	62	16	21	1.33
1474225--1474266	20	2.0	20	82	13	50	50	11	2	35	1.52
1474224--1474701	184	2.6	183	84	5	630	45	13	13	27	1.80
1476681--1476731	24	2.2	23	83	13	61	49	1	5	43	1.38
1478114--1478159	21	2.2	20	85	7	65	21	15	15	47	1.81
1480661--1480688	14	2.0	14	100	0	56	50	7	28	14	1.69
1485009--1485101	43	2.2	41	94	3	159	16	10	35	37	1.83
1487849--1487908	3	20.3	3	81	10	70	33	1	0	65	1.03
1489303--1489355	25	2.1	25	83	13	65	32	0	5	62	1.19
1489349--1489407	2	29.5	2	100	0	118	49	0	0	50	1.00
1490233--1490274	2	21.0	2	95	0	75	47	0	0	52	1.00
1491838--1491866	13	2.3	13	94	5	51	24	13	6	55	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1494561--1494593	8	3.9	9	88	11	52	81	0	18	0	0.68
1500021--1500736	46	15.6	46	91	1	1118	25	22	18	33	1.97
1500021--1500736	229	3.1	229	92	1	1141	25	22	18	33	1.97
1500537--1500613	26	3.2	26	62	27	69	28	23	15	32	1.95
1500629--1500703	25	3.2	25	65	18	70	24	24	14	37	1.93
1500986--1501048	3	21.3	3	80	9	58	36	1	0	61	1.05
1502443--1502476	2	17.0	2	93	0	59	52	0	0	47	1.00
1505472--1505522	23	2.2	23	96	0	93	27	11	9	50	1.70
1509664--1509993	177	1.9	175	97	1	624	40	5	14	39	1.70
1511025--1511064	2	20.0	2	100	0	80	50	0	0	50	1.00
1515702--1515727	3	8.7	3	100	0	52	69	0	0	30	0.89
1522215--1522423	75	2.8	73	79	5	226	28	5	13	52	1.64
1529770--1529842	18	3.9	18	73	7	74	20	19	28	31	1.97
1536591--1536667	38	2.0	38	89	0	118	23	22	27	27	1.99
1536594--1536666	18	3.9	18	80	7	92	21	21	28	27	1.99
1553505--1553552	6	7.7	6	86	6	60	85	0	4	10	0.73
1553519--1553564	12	3.8	12	82	5	56	82	0	6	10	0.83
1554208--1554281	33	2.2	33	95	0	130	35	18	13	32	1.90
1554426--1554620	44	4.4	44	70	7	135	31	22	18	27	1.97
1554414--1555597	133	9.0	133	88	1	1611	30	21	19	28	1.98
1554826--1555293	44	10.6	44	67	9	200	29	22	21	27	1.99
1561070--1561121	20	2.6	20	75	6	52	30	9	30	28	1.89

Tables:   1   2   3   4   5   6   7

The End!