genome.fa.s8152.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008152.1 Hibiscus syriacus cultivar Beakdansim tig00110718_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  877984

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209037--209106	20	3.5	20	88	0	77	42	25	15	15	1.87
209150--209196	20	2.3	20	88	0	67	21	19	23	36	1.95
209528--209589	18	3.0	22	69	26	62	17	16	38	27	1.91
209767--209838	20	3.6	20	83	7	76	20	22	22	34	1.97
209787--209841	20	2.8	20	94	0	92	20	21	20	38	1.94
209807--209880	21	3.6	21	83	7	80	31	18	22	27	1.98
210074--210116	22	2.0	22	95	0	77	46	18	11	23	1.82
216353--216403	23	2.2	22	82	6	57	45	3	1	49	1.32
220359--220431	24	3.0	24	76	4	85	20	12	15	52	1.74
220321--220431	48	2.3	49	84	6	138	21	14	12	51	1.75
220591--220619	2	14.5	2	100	0	58	48	0	0	51	1.00
221749--221803	24	2.3	24	90	0	92	18	21	38	21	1.94
222123--222207	39	2.2	38	87	6	125	35	2	17	44	1.62
233265--233321	27	2.1	28	83	9	73	33	1	17	47	1.58
233451--233505	18	3.4	18	65	31	52	38	0	9	52	1.33
233533--233572	21	1.9	21	94	0	71	30	0	12	57	1.36
233756--233846	30	3.1	29	87	6	112	40	1	12	46	1.48
233790--233870	22	3.3	22	73	23	81	44	0	13	41	1.44
233823--233861	11	3.5	11	80	13	53	48	0	12	38	1.42
234571--234680	50	2.4	48	79	16	128	50	9	0	39	1.40
234642--234704	28	2.2	30	94	5	112	57	12	0	30	1.36
234646--234711	28	2.4	28	87	10	107	56	12	0	31	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234681--234729	21	2.3	21	85	3	71	53	16	0	30	1.43
235088--235147	23	2.6	23	86	0	84	30	21	23	25	1.99
235335--235377	21	2.0	21	86	0	59	16	37	20	25	1.93
235384--235455	29	2.5	29	88	0	99	18	19	37	25	1.94
237298--237417	51	2.4	51	83	6	138	19	35	26	19	1.95
237527--237567	10	4.1	10	84	12	57	31	29	0	39	1.57
239412--239469	18	3.2	18	85	0	89	27	27	20	24	1.99
242071--242108	16	2.4	17	91	8	62	44	0	5	50	1.24
244142--244266	50	2.5	50	81	11	148	29	21	24	24	1.99
244301--244397	51	1.9	51	89	2	151	20	31	31	15	1.94
245514--245564	23	2.3	22	78	18	52	47	0	11	41	1.40
248899--248951	21	2.5	21	90	0	79	30	30	20	18	1.97
248960--249122	21	8.0	21	76	9	158	20	20	24	33	1.97
248985--249119	40	3.3	40	97	2	252	20	20	25	34	1.96
248959--249123	61	2.7	62	76	9	160	21	20	24	33	1.97
249744--249776	6	5.5	6	96	0	57	0	15	54	30	1.41
249864--250502	42	15.3	42	94	0	1106	36	23	19	20	1.95
252328--252388	26	2.3	26	83	8	70	42	3	3	50	1.34
254025--254094	2	36.5	2	76	23	71	48	2	1	47	1.25
254326--254456	52	2.5	51	90	1	199	52	13	12	21	1.73
254336--254418	29	3.1	29	64	25	81	55	10	13	20	1.67
261743--261837	31	3.1	31	80	3	102	34	20	17	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275987--276081	31	3.1	31	78	3	102	34	20	17	27	1.95
281646--281703	23	2.7	21	79	10	71	34	10	15	39	1.81
286571--286623	27	2.0	27	88	0	79	33	16	16	32	1.92
286541--287045	135	3.7	134	81	7	574	31	17	18	33	1.94
286541--287140	270	2.2	270	86	3	814	30	17	18	33	1.94
286546--287136	135	4.4	131	76	9	494	30	16	18	33	1.94
289544--289654	46	2.4	46	100	0	222	33	18	17	31	1.93
290432--290484	23	2.3	23	80	9	63	35	7	5	50	1.54
294154--294222	3	22.7	3	82	8	86	39	0	0	60	0.97
294739--294787	21	2.4	22	74	19	52	59	32	8	0	1.27
295673--295714	16	2.5	17	78	17	52	30	0	2	66	1.04
295674--295707	17	2.0	17	88	11	52	26	0	2	70	1.01
298445--298571	63	2.0	63	96	0	236	44	10	11	33	1.75
300662--300707	2	23.0	2	95	0	83	50	2	0	47	1.13
301017--301117	1	101.0	1	76	0	58	84	0	11	2	0.79
301002--301123	17	7.1	16	74	17	86	81	0	15	2	0.85
301027--301099	37	2.0	37	88	0	110	82	1	12	4	0.88
301002--301116	8	14.4	8	80	6	110	81	0	14	2	0.84
301064--301123	24	2.5	23	84	10	84	85	0	15	0	0.61
301728--301789	32	1.9	32	87	6	90	46	17	14	20	1.83
304962--305119	54	3.0	52	80	10	178	36	15	21	25	1.93
304962--305115	50	3.0	50	84	5	166	36	15	21	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305486--305540	22	2.5	22	93	0	101	34	10	14	40	1.81
306214--306568	76	4.8	76	90	6	602	24	18	21	35	1.95
306414--306550	67	2.0	67	98	0	265	25	19	18	36	1.94
306693--307132	76	5.8	76	96	0	808	25	19	21	34	1.96
307256--307619	76	4.8	76	96	0	674	24	19	20	34	1.96
306769--308076	487	2.7	487	96	0	2402	26	18	19	35	1.94
306214--307619	563	2.5	562	95	1	2522	26	17	19	36	1.94
307256--308076	152	5.2	152	77	11	851	26	18	19	35	1.95
307743--308076	76	4.4	76	94	0	587	23	19	21	35	1.96
308209--308271	3	20.7	3	84	9	83	38	0	0	61	0.96
309723--309752	12	2.6	11	90	10	51	26	0	0	73	0.84
310937--310978	17	2.4	18	80	8	50	47	0	0	52	1.00
310943--310978	17	2.1	17	89	0	54	50	0	0	50	1.00
310954--310986	16	2.0	17	88	5	50	48	3	0	48	1.17
310962--311036	16	5.0	15	74	19	50	62	5	0	32	1.17
313633--313679	2	23.5	2	95	0	85	51	0	0	48	1.00
323119--323181	23	2.6	24	78	19	60	52	0	0	47	1.00
323136--323199	22	2.9	23	84	6	71	48	0	0	51	1.00
323147--323226	32	2.5	33	82	14	103	48	1	0	50	1.08
323256--323321	28	2.4	26	80	12	78	45	0	3	51	1.16
323256--323326	29	2.5	28	76	15	76	46	0	2	50	1.16
323549--323593	14	3.1	14	81	6	63	35	13	6	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323547--323591	15	3.1	15	80	6	65	31	13	8	46	1.74
333325--333361	20	1.9	19	89	10	58	45	10	24	18	1.81
339085--339259	56	3.1	56	83	4	181	40	12	17	30	1.86
340802--340908	35	3.1	35	95	0	187	34	20	24	20	1.96
351030--351080	20	2.5	20	100	0	102	23	21	35	19	1.96
351593--351617	13	1.9	13	100	0	50	48	16	0	36	1.46
351887--351923	17	2.1	18	90	5	58	56	24	0	18	1.41
352224--352261	12	3.2	12	92	0	58	7	39	26	26	1.83
353957--353994	20	1.9	20	88	0	58	13	26	34	26	1.93
359386--359574	102	1.9	102	94	0	333	29	30	19	21	1.97
362139--362205	21	3.0	21	80	14	64	73	2	4	19	1.14
364439--364483	20	2.2	20	80	7	56	40	4	2	53	1.33
367405--367434	14	2.1	14	100	0	60	46	6	13	33	1.69
367418--367458	21	2.0	21	100	0	82	43	12	14	29	1.82
368736--368774	20	2.0	20	94	0	69	10	28	33	28	1.90
369417--369451	15	2.3	15	95	0	61	14	22	31	31	1.94
373414--373583	88	1.9	87	92	3	288	32	18	10	38	1.84
381255--381288	14	2.4	14	95	0	59	32	2	35	29	1.73
385986--386031	15	2.8	18	71	21	55	30	0	4	65	1.12
385986--386093	35	3.2	34	82	13	109	35	0	2	62	1.10
386233--386286	17	3.2	17	72	0	54	31	0	3	64	1.11
387817--387864	21	2.3	21	85	0	60	25	39	12	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387868--387961	21	4.5	21	92	5	129	18	35	26	20	1.95
388484--388580	33	2.9	34	85	3	133	55	4	3	37	1.35
388482--388587	34	3.2	33	82	8	133	54	4	2	37	1.36
393380--393420	3	14.0	3	80	14	50	31	2	0	65	1.05
397657--397696	20	2.0	20	90	0	62	25	30	27	17	1.97
397808--397849	21	2.0	21	95	0	75	23	21	28	26	1.99
398132--398201	34	2.1	32	86	5	95	32	15	30	21	1.94
398857--398886	2	15.0	2	92	0	51	50	3	0	46	1.18
398990--399037	25	2.0	25	91	4	80	62	6	0	31	1.20
399029--399083	28	1.9	29	85	3	76	72	9	0	18	1.10

Tables:   1   2   3   4   5