genome.fa.s8152.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008152.1 Hibiscus syriacus cultivar Beakdansim tig00110718_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  877984

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399014--399084	29	2.4	30	76	11	74	71	7	0	21	1.09
399073--399115	18	2.3	18	88	4	59	65	4	2	27	1.25
399118--399169	25	2.1	25	81	0	59	61	9	3	25	1.44
402673--402924	22	11.5	22	90	0	378	50	9	0	39	1.39
404886--405271	57	6.8	57	93	0	655	45	19	5	29	1.73
406349--406392	22	2.0	22	90	0	70	54	22	0	22	1.45
408094--408148	27	2.2	25	84	15	85	38	12	7	41	1.71
408191--408297	29	3.5	30	76	15	110	62	0	10	27	1.27
408191--408309	31	3.8	30	76	15	109	63	0	10	25	1.33
408191--408317	63	2.0	64	89	3	193	61	1	11	25	1.38
414734--414773	15	2.6	16	92	4	64	62	20	10	7	1.50
415008--415064	12	4.9	12	81	12	66	22	22	24	29	1.99
414984--415072	47	1.9	46	83	2	115	28	23	22	25	1.99
414984--415072	23	3.8	23	89	1	115	28	23	22	25	1.99
415009--415072	11	5.6	11	80	7	74	25	23	23	28	2.00
415585--415640	24	2.3	24	96	0	85	53	23	12	10	1.69
415592--415641	14	3.9	14	75	20	63	52	26	12	10	1.70
416701--416751	14	3.4	14	76	21	50	74	0	21	3	0.98
418920--418986	20	3.3	20	65	19	57	31	23	23	20	1.98
418920--419045	41	3.0	41	98	1	243	29	26	22	21	1.99
419458--419544	43	2.0	43	97	0	165	51	8	12	27	1.67
421020--421056	17	2.1	18	90	5	58	54	0	0	45	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421592--421639	21	2.3	20	82	6	60	35	6	2	56	1.36
422138--422220	42	2.0	42	85	4	114	33	20	12	33	1.89
422138--422212	20	3.7	20	70	7	60	34	20	12	33	1.89
422794--422826	14	2.3	15	89	5	50	48	21	12	18	1.80
422809--422846	20	1.9	19	89	5	58	50	18	13	18	1.78
422794--422872	34	2.3	34	93	4	133	46	21	15	16	1.83
422884--422914	14	2.2	14	94	0	53	12	16	25	45	1.83
422884--422948	34	1.9	34	87	0	94	18	13	21	46	1.84
424451--424554	42	2.5	42	87	0	136	25	37	17	20	1.93
424669--424739	21	3.4	21	92	3	117	19	14	30	35	1.91
425140--425201	21	3.0	21	87	0	88	22	33	12	30	1.92
425193--425243	21	2.4	21	93	0	84	21	37	17	23	1.94
426525--426589	20	3.2	20	80	0	76	27	9	16	46	1.78
426511--426589	40	2.0	40	84	0	104	26	10	16	46	1.78
428920--428953	3	11.3	3	93	0	59	2	32	0	64	1.08
429129--429181	24	2.2	24	89	0	79	45	20	13	20	1.84
429307--429340	12	2.8	12	90	0	50	14	0	29	55	1.40
430249--430290	20	2.1	20	95	0	75	33	11	26	28	1.92
430252--430297	20	2.3	20	88	0	65	36	10	23	28	1.89
430330--430443	20	5.6	21	72	8	85	30	10	28	30	1.90
430330--430461	40	3.3	40	77	6	149	28	11	28	31	1.91
430105--430461	81	4.4	80	73	9	253	33	11	22	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430903--430952	20	2.5	20	86	3	64	32	26	24	18	1.97
430949--431002	19	2.8	20	78	16	67	35	5	25	33	1.80
430959--431000	19	2.2	19	95	0	75	38	4	26	30	1.77
431406--431889	40	12.1	40	85	6	581	35	20	21	22	1.96
431406--431818	139	3.0	139	86	6	647	35	21	21	22	1.96
431619--431686	35	1.9	35	87	0	100	36	16	22	25	1.94
431677--431722	24	1.9	24	86	0	65	34	23	23	17	1.96
431406--431935	179	3.0	176	81	9	567	35	20	21	22	1.96
431406--431935	139	3.8	138	83	7	632	35	20	21	22	1.96
431435--431916	238	2.0	233	86	4	671	35	20	20	22	1.96
431534--431935	219	1.8	214	84	7	551	35	20	21	22	1.96
435350--435402	27	2.0	27	92	7	90	7	26	7	58	1.52
437975--438018	21	2.1	21	95	0	79	27	25	25	22	2.00
438810--438853	23	1.9	23	100	0	88	15	27	27	29	1.96
441408--441506	21	4.8	20	72	6	72	36	23	19	21	1.95
441474--441666	20	9.6	20	84	5	246	34	27	19	18	1.95
442056--442112	14	3.7	14	70	20	51	8	24	21	45	1.80
442046--442116	33	2.2	33	94	0	124	11	23	16	47	1.79
442196--442272	21	3.7	21	79	6	93	48	15	22	14	1.81
442257--442313	14	3.7	14	75	20	60	43	22	24	8	1.81
442250--442329	33	2.4	33	95	0	142	47	22	21	8	1.78
442355--442419	21	3.1	21	82	4	96	10	26	15	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442354--442417	20	3.2	20	82	4	92	12	25	15	46	1.81
444330--444453	33	3.7	33	89	1	176	45	26	17	9	1.79
444362--444453	19	5.4	18	71	24	56	46	27	17	8	1.77
444379--444437	14	3.9	14	76	20	64	47	28	16	6	1.72
444449--444621	19	9.6	19	76	12	159	10	20	23	45	1.81
444471--444527	14	3.7	14	75	20	51	10	22	22	43	1.84
444449--444621	33	4.8	38	80	8	168	10	20	23	45	1.81
445074--445140	21	3.2	21	70	6	64	25	37	19	17	1.94
446544--446579	14	2.6	14	95	0	63	33	0	22	44	1.53
446686--446784	19	5.4	19	81	14	127	46	17	22	14	1.83
446686--446803	53	2.2	53	93	4	211	44	17	23	13	1.85
446793--446964	19	9.7	19	74	21	176	14	22	18	44	1.85
446799--446936	53	2.6	53	98	1	267	13	23	16	45	1.83
446870--446997	34	3.8	34	85	6	179	13	21	20	45	1.84
449263--449287	12	2.1	12	100	0	50	0	28	0	72	0.86
449462--449508	24	2.0	24	87	8	69	38	21	14	25	1.92
450201--450386	20	9.3	20	89	0	210	20	18	26	34	1.96
450902--451130	20	11.4	20	86	1	235	18	18	25	37	1.93
449686--451087	701	2.0	701	98	0	2678	30	17	20	31	1.95
452754--452800	23	2.0	24	83	4	60	19	0	19	61	1.34
454140--454168	15	1.9	15	100	0	58	62	17	0	20	1.33
456494--456655	64	2.5	65	76	8	161	32	20	20	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457449--457665	103	2.1	103	94	0	380	26	14	23	35	1.93
457682--457744	23	2.7	23	92	0	99	19	28	26	25	1.98
463163--463388	103	2.2	103	94	1	391	25	13	24	36	1.92
463397--463459	23	2.7	23	92	0	99	19	28	26	25	1.98
503379--503443	22	3.2	22	62	20	59	44	10	13	30	1.78
503383--503460	39	2.0	39	97	0	147	46	8	12	32	1.73
505789--505879	39	2.4	36	85	12	114	27	39	21	10	1.87
516934--516961	10	2.8	10	100	0	56	17	64	0	17	1.30
531609--531651	22	2.0	22	82	17	54	32	39	4	23	1.75
541278--541356	20	4.1	20	78	6	99	26	27	21	24	1.99
541279--541351	38	1.9	38	88	0	110	27	28	21	21	1.99
541319--541362	20	2.2	20	87	0	61	25	34	20	20	1.97
545167--545208	15	2.8	15	88	0	66	14	42	19	23	1.87
546861--546927	29	2.3	29	86	0	89	53	16	1	28	1.52
546956--547027	29	2.5	29	81	0	81	48	16	6	27	1.72
549701--549735	18	1.9	18	94	0	61	11	17	51	20	1.75
553278--553386	38	2.9	37	87	5	150	27	31	21	20	1.98
553278--553386	18	5.8	18	84	8	146	27	31	21	20	1.98
555533--555557	13	1.9	13	100	0	50	60	0	40	0	0.97
557467--557536	27	2.6	27	95	0	131	32	14	7	45	1.72
558995--559076	15	5.5	15	86	2	112	36	7	20	35	1.81
558991--559076	45	1.9	44	90	2	136	39	6	19	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558995--559076	30	2.8	30	92	1	130	36	7	20	35	1.81
559059--559108	20	2.5	20	100	0	100	40	10	16	34	1.81
559308--559409	28	3.5	28	78	14	100	51	0	0	46	1.14
559308--559403	30	3.2	29	81	11	97	51	1	1	46	1.14
559307--559425	28	4.1	28	77	12	84	49	0	1	47	1.17
559422--559499	23	3.4	23	76	15	65	53	0	0	46	1.00
559422--559484	22	3.0	22	84	11	78	55	0	0	44	0.99
559435--559484	21	2.3	21	86	10	66	54	0	0	46	1.00
559673--559787	42	2.7	42	95	2	205	48	20	14	16	1.81
567211--567267	28	2.0	28	83	12	73	22	17	8	50	1.73

Tables:   1   2   3   4   5