genome.fa.s8152.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008152.1 Hibiscus syriacus cultivar Beakdansim tig00110718_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  877984

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569684--569746	17	3.8	16	79	6	72	80	0	19	0	0.70
569677--569746	33	2.1	34	86	7	99	80	0	20	0	0.72
569677--569739	8	7.8	8	77	10	65	80	0	19	0	0.70
573007--573499	124	3.9	123	75	12	483	32	24	17	24	1.97
572871--573452	261	2.2	261	92	1	952	32	24	17	24	1.97
573548--573795	137	1.8	137	91	1	417	34	25	14	25	1.94
574510--574546	19	1.9	19	88	0	56	24	13	37	24	1.91
576868--576964	48	2.0	48	85	0	131	15	28	16	39	1.89
579810--579851	21	2.0	22	82	13	54	14	28	19	38	1.90
580275--580698	55	7.7	55	87	5	502	30	22	17	28	1.97
580275--580698	110	3.9	109	88	2	557	30	22	17	28	1.97
582046--582200	10	16.8	9	72	17	81	7	14	0	78	0.94
582054--582184	12	10.3	12	71	23	67	5	15	0	79	0.90
582064--582183	17	7.1	16	77	12	98	5	14	0	80	0.90
582058--582203	43	3.3	44	74	15	140	6	14	0	78	0.94
582054--582183	8	18.1	7	69	21	67	5	14	0	80	0.89
582058--582205	75	2.0	74	83	12	187	7	14	0	77	0.97
591844--591994	46	3.2	46	90	4	223	42	20	7	29	1.79
598964--599025	29	2.1	30	81	3	72	46	19	8	25	1.77
599003--599046	21	2.1	21	100	0	88	50	13	9	27	1.72
601687--601762	31	2.5	31	86	4	100	31	9	11	47	1.72
602157--602262	39	2.7	38	77	8	106	37	16	1	43	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602514--602582	20	3.1	20	85	14	75	39	5	0	55	1.24
604742--604785	2	22.5	2	95	4	81	50	0	0	50	1.00
606216--606264	16	3.2	16	77	13	59	53	2	14	30	1.52
606730--606792	30	2.1	30	96	0	117	33	23	4	38	1.76
613914--613993	23	3.6	22	79	6	99	25	25	23	26	2.00
613898--613990	44	2.1	43	88	5	134	27	24	21	25	1.99
615303--615374	14	5.7	14	74	24	79	16	12	12	58	1.63
615312--615359	10	4.4	10	80	19	60	16	12	12	58	1.63
615285--615369	24	3.5	24	93	6	136	17	11	14	56	1.67
615623--615673	27	1.9	26	84	4	66	11	9	17	60	1.57
616233--616285	19	2.8	19	97	0	97	22	30	22	24	1.99
620838--620897	20	3.0	20	95	0	102	51	8	23	16	1.71
621616--621663	21	2.3	21	85	7	62	27	37	27	8	1.85
633776--633837	23	2.7	22	82	2	70	9	24	17	48	1.77
639687--639884	75	2.6	76	88	4	267	18	24	33	23	1.97
642254--642293	21	1.9	21	89	0	62	10	25	40	25	1.86
642276--642336	23	2.9	21	87	7	79	18	26	34	21	1.96
648096--648307	76	2.8	76	87	5	277	19	22	33	25	1.97
648631--648656	5	5.2	5	100	0	52	23	57	19	0	1.40
659759--659789	16	2.0	16	93	6	55	16	32	12	38	1.86
676310--676375	23	2.8	24	86	4	89	25	16	19	37	1.93
678190--678262	30	2.4	31	90	2	121	21	17	30	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681520--681946	213	2.0	215	97	1	804	35	17	11	35	1.86
682567--682647	14	6.1	14	76	11	71	61	12	11	14	1.56
685509--685694	91	2.0	92	96	1	347	42	9	11	36	1.74
686204--686234	14	2.2	14	100	0	62	6	16	25	51	1.68
687396--687426	16	1.9	16	100	0	62	6	12	22	58	1.58
691991--692029	17	2.4	16	91	8	62	30	7	2	58	1.39
695849--695896	3	16.3	3	79	12	55	60	0	2	37	1.09
695849--695896	21	2.3	20	89	3	69	60	0	2	37	1.09
695849--695897	14	3.3	15	86	13	75	59	0	2	38	1.09
696119--696417	121	2.4	123	87	3	417	25	16	24	33	1.95
696590--696675	34	2.5	34	92	0	136	22	16	24	37	1.93
696343--696915	274	2.1	276	88	3	828	27	17	21	33	1.96
696624--697137	240	2.1	240	90	0	823	26	19	20	33	1.96
697312--697352	21	2.0	20	86	9	57	43	0	29	26	1.55
722710--723176	44	10.7	44	72	14	267	49	7	17	25	1.72
722824--723070	132	1.9	131	87	4	361	51	6	19	23	1.70
722995--723155	87	1.9	85	81	11	193	51	5	16	26	1.66
723081--723182	43	2.4	44	82	8	122	52	5	13	27	1.63
726549--726730	91	2.0	91	95	0	328	27	12	20	39	1.89
733145--733197	26	2.1	26	89	3	81	47	0	16	35	1.48
735992--736063	36	2.0	36	91	5	119	27	26	26	19	1.99
737125--737153	7	4.1	7	100	0	58	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
746653--746702	23	2.2	23	85	0	64	42	8	10	40	1.68
747020--747084	31	2.1	31	88	0	94	24	23	10	41	1.86
749857--749933	32	2.4	32	80	12	86	38	0	1	59	1.06
751633--751680	21	2.3	21	85	0	60	25	39	12	22	1.89
751684--751756	21	3.5	21	88	7	112	17	34	27	20	1.95
752269--752365	33	2.9	34	85	3	133	55	4	3	37	1.35
752267--752372	34	3.2	33	82	8	133	54	4	2	37	1.36
752753--753226	124	3.8	126	97	1	895	32	20	25	21	1.98
752753--753226	250	1.9	249	97	1	905	32	20	25	21	1.98
753294--753331	8	4.9	8	80	6	51	39	26	0	34	1.57
756324--756363	13	3.2	13	89	7	64	45	0	0	55	0.99
759945--760061	54	2.2	54	98	1	227	52	9	7	29	1.61
760750--760788	14	2.8	14	88	7	53	56	0	2	41	1.13
761521--761566	19	2.4	19	85	7	58	32	4	8	54	1.51
763100--763144	19	2.4	18	85	14	56	44	2	0	53	1.13
763198--763245	23	2.1	23	88	7	71	43	0	4	52	1.20
763379--763441	20	3.2	20	78	10	67	39	4	1	53	1.31
763370--763441	20	3.7	20	75	14	62	41	4	1	52	1.29
765606--765648	8	5.2	8	80	5	50	39	2	0	58	1.11
765607--765657	25	2.0	26	92	3	86	37	5	0	56	1.23
775730--775785	30	1.9	29	85	7	78	42	32	3	21	1.70
775916--776210	36	8.2	36	92	1	416	18	26	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
786575--786754	98	1.8	98	100	0	360	32	13	9	44	1.76
790188--790246	30	2.0	30	83	6	75	38	10	18	32	1.84
794134--794159	4	6.5	4	100	0	52	76	0	0	23	0.78
794602--794694	47	2.0	47	93	0	159	37	5	5	51	1.48
795720--795791	17	4.4	16	81	6	74	36	0	2	61	1.11
797611--797755	65	2.2	64	84	3	175	28	16	23	31	1.96
798106--798139	16	2.1	16	94	0	59	17	44	0	38	1.49
800390--800486	44	2.2	44	83	10	119	28	18	23	28	1.98
800418--800486	24	3.2	21	75	16	70	27	20	21	30	1.98
806351--806418	19	3.6	19	100	0	136	30	16	32	20	1.94
818683--818710	2	14.0	2	100	0	56	50	0	0	50	1.00
821744--821849	53	2.0	53	100	0	212	32	16	7	43	1.76
831134--831169	3	12.0	3	93	0	54	33	5	0	61	1.19
831680--831713	17	2.0	17	100	0	68	35	5	11	47	1.65
831874--831906	16	2.1	16	88	5	50	33	0	0	66	0.92
832922--832954	13	2.4	14	85	10	50	24	3	6	66	1.28
850985--851036	20	2.6	20	96	0	95	28	25	23	23	1.99
851344--851373	3	10.0	3	100	0	60	33	0	0	66	0.92
851373--851411	17	2.3	17	90	0	60	64	0	5	30	1.15
851909--852349	113	3.9	112	88	2	609	28	20	13	37	1.90
852712--852861	22	7.1	22	76	8	141	40	10	15	34	1.80
852729--852858	20	6.3	20	79	7	143	42	9	16	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
852721--852861	42	3.4	42	83	5	169	41	9	16	32	1.80
852729--852858	62	2.1	62	91	0	206	42	9	16	32	1.79
854118--854339	75	3.0	74	83	4	268	30	19	17	32	1.95
857642--857681	14	2.9	14	85	14	57	0	17	0	82	0.67
857642--857683	8	5.7	7	79	20	50	0	16	0	83	0.65
860818--860854	14	2.6	15	83	12	51	62	10	10	16	1.55
860878--860918	6	6.0	7	78	16	50	56	9	17	17	1.67
864619--864695	3	27.0	3	84	10	108	66	1	1	31	1.08
864619--864695	17	4.5	18	90	4	108	66	1	1	31	1.08
865258--865396	21	6.8	21	79	15	111	27	26	16	29	1.97

Tables:   1   2   3   4   5