genome.fa.s8177.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008177.1 Hibiscus syriacus cultivar Beakdansim tig00110773_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1003138

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 581 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261580--261614	2	17.5	2	100	0	70	48	0	0	51	1.00
261681--261714	12	2.8	12	95	0	59	8	23	47	20	1.78
263125--263192	20	3.4	20	71	4	57	42	19	13	25	1.87
263223--263282	14	3.9	14	73	23	57	15	15	26	43	1.85
263234--263273	20	2.0	20	90	0	62	15	15	20	50	1.79
263851--263982	40	3.3	40	82	0	147	37	11	21	28	1.88
263862--263980	20	5.9	20	69	7	89	40	11	21	26	1.87
265084--265155	28	2.5	31	86	11	107	54	0	0	45	0.99
265085--265174	43	2.1	43	86	12	123	54	0	0	45	0.99
265085--265174	28	3.1	28	77	14	78	54	0	0	45	0.99
265085--265154	15	4.8	15	84	12	101	55	0	0	44	0.99
265085--265165	15	5.5	15	82	5	76	53	0	0	46	1.00
265122--265281	58	2.8	59	77	12	147	50	3	3	43	1.36
265201--265268	21	3.2	21	76	14	68	47	4	4	44	1.43
265106--265300	15	12.8	15	67	21	70	50	3	3	43	1.35
265282--265323	22	2.0	21	90	9	68	50	9	4	35	1.56
265311--265363	21	2.5	21	84	0	70	47	3	9	39	1.54
267732--267899	45	3.7	44	85	4	201	40	6	20	32	1.78
267732--267905	47	3.8	47	86	3	189	40	6	20	33	1.77
268165--268796	320	2.0	316	90	3	1011	37	10	13	38	1.79
270384--270451	31	2.2	31	100	0	136	47	13	19	20	1.82
270957--271051	33	2.8	33	87	4	118	78	2	15	3	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271008--271052	24	1.9	23	90	4	72	84	0	11	4	0.76
274306--274346	16	2.6	16	100	0	82	29	9	19	41	1.83
275119--275202	25	3.5	24	66	18	57	39	8	17	34	1.80
275036--275206	45	3.7	46	86	3	231	39	7	19	33	1.80
275785--275838	24	2.2	24	83	6	65	44	3	9	42	1.54
275816--275852	13	2.7	14	88	12	51	40	0	8	51	1.32
275816--275852	15	2.5	15	91	4	58	40	0	8	51	1.32
275807--275867	22	3.0	19	81	13	61	40	3	6	49	1.45
275775--275895	57	2.1	59	83	6	149	42	5	8	43	1.58
275858--275931	37	2.1	36	84	5	96	39	10	9	40	1.73
276015--276052	2	19.0	2	94	0	67	2	47	0	50	1.15
276052--276352	25	12.3	25	68	19	149	46	4	2	46	1.36
276052--276352	2	151.0	2	67	17	137	46	4	2	46	1.36
276404--276434	9	3.4	9	90	0	53	35	3	9	51	1.51
276465--276516	11	5.1	10	75	11	52	36	1	9	51	1.46
276597--276653	22	2.6	22	83	5	71	49	3	1	45	1.29
276690--276927	20	12.3	20	66	16	65	43	4	6	46	1.48
276816--276970	2	77.0	2	69	17	81	47	4	3	45	1.39
276817--276878	29	2.2	28	91	2	97	48	1	4	45	1.33
276835--276970	11	12.3	11	66	20	61	47	4	2	44	1.38
277068--277781	215	3.3	214	93	2	1218	30	11	7	50	1.66
279658--279783	64	2.0	65	91	1	209	33	5	17	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285897--285999	50	2.1	50	100	0	206	26	13	17	42	1.86
286493--286557	27	2.4	27	94	0	112	27	24	23	24	2.00
288510--288581	29	2.5	29	97	0	135	19	36	33	11	1.87
288608--288656	22	2.2	22	92	0	80	8	53	16	22	1.69
288969--288995	11	2.5	11	100	0	54	18	0	37	44	1.50
289132--289236	30	3.4	30	86	5	140	38	0	14	46	1.51
289202--289246	23	2.0	22	83	12	56	42	0	15	42	1.47
289179--289233	15	3.6	16	70	20	55	41	0	14	43	1.45
289279--289314	16	2.2	16	90	0	54	27	5	11	55	1.57
289346--289372	4	6.8	4	100	0	54	25	0	22	51	1.48
291592--291645	22	2.4	22	73	14	56	44	1	0	53	1.11
291639--291744	42	2.5	41	86	6	133	51	5	2	39	1.40
291825--292108	14	22.0	13	66	24	76	43	8	3	44	1.51
291810--292108	26	11.7	25	82	9	245	43	8	3	44	1.50
291857--292045	105	1.8	102	86	5	272	43	7	3	45	1.49
291834--292108	52	5.3	52	80	7	294	43	8	3	44	1.51
291839--292082	131	1.9	127	88	5	364	43	8	2	45	1.49
292384--292442	12	5.1	12	78	13	70	42	5	1	50	1.34
292392--292446	23	2.4	23	88	8	78	40	5	1	52	1.35
292598--292674	22	3.3	22	65	28	59	45	10	0	44	1.38
292777--292803	14	1.9	14	100	0	54	40	14	0	44	1.46
292586--292799	49	4.4	49	96	1	385	45	11	0	42	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292745--292841	21	4.6	21	62	24	51	46	10	0	43	1.37
294330--294402	30	2.4	30	95	0	128	30	24	20	24	1.99
294388--294515	31	4.1	31	80	9	152	34	20	18	26	1.96
295889--295933	21	2.1	21	87	0	63	15	24	28	31	1.96
299684--299789	29	3.7	28	86	8	133	15	31	33	20	1.93
303108--303167	31	1.9	31	93	0	102	33	15	15	36	1.88
308058--308539	112	4.3	112	88	4	708	31	12	12	42	1.81
308502--308542	21	2.0	21	90	4	66	41	7	9	41	1.66
308620--308868	74	3.4	73	90	4	392	32	12	16	38	1.86
309105--309157	25	2.1	25	100	0	106	28	11	15	45	1.80
309191--309241	23	2.2	23	89	0	75	33	19	9	37	1.85
311031--311397	201	1.8	202	91	2	605	32	13	13	40	1.83
311820--311866	18	2.7	18	83	3	60	27	25	8	38	1.85
311961--312024	16	3.8	16	72	23	60	39	1	0	59	1.07
311966--312028	20	3.3	20	74	17	80	36	1	0	61	1.05
311967--312047	36	2.2	37	97	2	155	37	2	0	60	1.10
312319--312403	17	4.8	17	70	16	57	65	3	1	29	1.16
317875--317899	13	1.9	13	100	0	50	80	0	4	16	0.87
317966--318058	5	18.4	5	74	12	66	74	3	4	18	1.12
318016--318053	19	2.0	20	85	15	53	73	2	7	15	1.17
318123--318164	23	2.0	22	86	13	61	73	7	7	11	1.23
318309--318356	21	2.2	21	82	14	53	75	0	2	22	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
319382--319450	26	2.7	26	100	0	138	33	27	17	21	1.96
319798--319831	2	16.5	2	87	6	50	47	2	2	47	1.32
322998--323308	83	3.7	83	88	2	419	26	17	20	35	1.94
326074--326149	22	3.0	27	77	16	99	27	22	25	25	2.00
326081--326166	22	3.7	22	81	14	91	29	22	23	25	1.99
326185--326221	19	1.9	19	94	0	65	40	16	21	21	1.91
335146--335290	25	5.6	25	67	22	66	73	5	4	15	1.19
335223--335305	13	6.2	13	69	15	62	75	6	2	15	1.09
335420--335489	28	2.5	29	83	4	90	74	5	5	14	1.19
336948--337000	21	2.3	24	81	12	67	43	1	0	54	1.11
336992--337048	30	2.0	30	86	6	82	56	1	1	40	1.20
337327--337363	19	2.1	19	85	10	51	40	10	0	48	1.38
338248--338292	19	2.4	18	79	17	56	35	0	2	62	1.08
338255--338293	19	2.1	19	90	0	60	33	0	2	64	1.08
338254--338300	20	2.3	21	85	3	60	34	0	2	63	1.06
347443--347485	18	2.4	18	100	0	86	37	23	4	34	1.76
350873--350931	22	2.7	22	81	5	66	40	10	6	42	1.65
351844--351881	16	2.4	16	95	0	67	26	5	18	50	1.68
354384--354419	2	18.0	2	100	0	72	50	0	0	50	1.00
354707--354807	40	2.4	42	79	14	120	33	11	15	38	1.85
354836--354882	14	3.6	14	72	21	57	14	14	12	57	1.66
354845--354892	10	4.4	10	80	19	60	16	14	12	56	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354818--354893	24	3.1	24	88	3	107	15	13	15	55	1.70
355149--355218	24	3.0	23	83	4	70	5	10	25	58	1.52
355174--355228	10	5.1	10	75	16	56	7	12	23	56	1.61
355161--355218	24	2.5	23	85	2	80	6	12	24	56	1.59
356106--356187	40	2.0	40	95	0	146	34	25	15	24	1.95
356883--356947	29	2.2	30	80	2	78	41	24	6	27	1.78
365521--365570	24	2.0	25	88	7	75	10	48	4	38	1.56
368464--368502	20	2.0	20	85	10	53	41	0	2	56	1.13
374553--374620	22	3.1	22	100	0	136	30	26	0	42	1.56
379080--379113	9	3.7	9	96	4	59	50	17	8	23	1.74

Tables:   1   2   3   4   5