genome.fa.s8177.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008177.1 Hibiscus syriacus cultivar Beakdansim tig00110773_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1003138

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 581 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
854920--854982	22	2.9	22	85	4	83	49	15	14	20	1.80
855015--855061	21	2.2	22	88	3	69	23	34	21	21	1.97
855022--855062	22	1.9	21	95	5	73	19	36	17	26	1.94
855905--855991	31	2.8	31	85	5	113	31	22	4	41	1.74
862005--862057	22	2.4	22	90	0	88	45	16	16	20	1.86
862952--863023	30	2.3	32	90	7	121	30	25	5	38	1.78
866855--866918	21	3.0	21	90	0	110	25	20	26	28	1.99
867661--867696	16	2.2	17	90	5	56	36	2	19	41	1.66
868001--868052	20	2.6	20	96	0	95	26	17	19	36	1.94
883673--883811	70	2.0	71	85	4	192	30	25	26	17	1.97
887506--887610	54	2.0	51	92	5	174	32	18	20	28	1.96
887862--887920	31	1.9	31	92	0	100	42	5	8	44	1.57
887944--888505	22	25.5	22	85	4	758	47	10	0	41	1.41
894157--894189	2	16.5	2	100	0	66	51	0	0	48	1.00
894189--894222	2	17.0	2	100	0	68	50	0	50	0	1.00
896714--897028	158	2.0	157	91	0	513	33	14	10	40	1.80
899133--899225	47	2.0	47	95	2	170	36	2	21	39	1.66
900021--900070	15	3.3	15	88	0	73	38	8	22	32	1.83
900202--900274	23	3.0	25	86	8	105	20	24	21	32	1.97
900262--900331	24	3.0	23	74	12	63	28	17	20	34	1.95
909675--909754	31	2.7	30	73	11	76	51	6	3	38	1.45
917963--918335	55	6.9	55	84	4	316	29	24	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
917963--918335	110	3.4	107	80	6	380	29	24	17	28	1.97
918024--918320	161	1.8	160	82	4	373	27	23	18	30	1.97
918339--918421	37	2.2	37	85	4	105	21	21	15	40	1.90
919638--919732	13	7.3	13	76	14	72	3	20	0	76	0.91
919636--919848	34	6.5	31	73	22	111	4	17	0	77	0.93
919638--919848	33	6.4	30	73	20	131	4	17	0	78	0.90
919638--919848	41	5.6	37	73	20	147	4	17	0	78	0.90
919657--919848	8	23.9	8	76	11	144	3	17	0	78	0.89
933502--933600	40	2.5	40	95	3	175	32	10	3	54	1.49
933582--933612	2	16.0	2	93	6	55	48	0	0	51	1.00
933718--933769	3	16.3	3	81	15	52	36	0	1	61	1.07
933717--933775	30	2.0	30	90	6	93	37	0	1	61	1.07
934532--934574	3	15.0	3	85	9	63	65	0	0	34	0.93
935596--935812	23	9.7	23	80	8	207	23	26	0	48	1.57
935596--935812	45	4.8	46	79	8	223	23	26	0	48	1.57
935625--935715	43	2.1	42	86	6	121	25	21	2	50	1.60
941419--941481	23	2.7	23	92	0	108	14	26	25	33	1.94
942587--942654	23	3.0	23	72	8	66	32	22	23	22	1.98
942558--942654	46	2.1	46	84	3	124	36	19	22	21	1.95
942738--942833	44	2.2	44	84	3	122	33	19	14	32	1.92
948007--948055	23	2.1	23	88	0	71	32	20	24	22	1.98
948142--948237	44	2.2	44	82	0	111	36	17	12	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951337--951384	19	2.5	19	89	3	69	35	29	14	20	1.93
951423--951532	20	5.5	20	93	0	175	26	30	18	25	1.98
951399--951505	40	2.5	45	85	11	125	24	29	18	27	1.98
951399--951468	20	3.0	25	78	20	96	24	30	20	25	1.99
952248--952301	24	2.2	24	93	0	90	22	16	18	42	1.89
952491--952527	14	2.6	14	91	4	56	51	21	21	5	1.68
954564--954598	18	1.9	18	94	0	61	54	25	2	17	1.57
954656--954938	140	2.0	140	97	0	539	28	12	15	43	1.83
954909--955079	20	8.9	20	80	7	201	33	22	18	25	1.96
954921--955059	74	1.9	74	92	0	233	34	23	17	24	1.96
954909--955087	94	1.9	94	89	2	279	35	21	17	25	1.95
954916--955128	94	2.3	94	85	4	270	34	22	18	24	1.96
955118--955195	20	3.9	20	89	0	111	12	17	25	43	1.85
955315--955351	14	2.6	14	100	0	74	48	21	0	29	1.50
956749--956829	21	3.8	20	77	6	72	25	19	33	20	1.97
956746--956856	42	2.6	40	79	10	114	27	17	35	19	1.94
957332--957375	20	2.2	20	95	0	79	50	22	13	13	1.77
957404--957452	19	2.5	19	80	3	62	51	22	16	10	1.74
957412--957448	19	1.9	19	94	0	65	48	27	16	8	1.74
957453--957490	20	1.9	20	88	0	58	10	21	21	47	1.80
957457--957532	33	2.3	34	88	2	109	13	21	21	44	1.85
957524--957613	41	2.2	40	92	2	144	17	20	24	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
957524--957613	20	4.4	20	91	2	144	17	20	24	37	1.93
957524--957632	40	2.7	41	84	4	132	17	18	24	39	1.92
959567--959610	19	2.3	19	88	7	63	45	25	15	13	1.83
959975--960031	22	2.7	21	78	10	62	24	12	43	19	1.85
959985--960027	22	2.0	22	90	0	68	20	11	44	23	1.84
960368--960415	19	2.5	19	86	3	60	20	14	27	37	1.92
961016--961172	79	2.0	79	84	0	206	38	8	15	38	1.77
963331--963399	31	2.2	31	100	0	138	46	31	2	18	1.64
967200--967252	21	2.5	21	84	6	72	18	24	18	37	1.94
967242--967294	20	2.7	20	96	0	97	37	22	20	18	1.94
967281--967347	20	3.3	20	95	0	116	31	26	19	22	1.98
968184--968230	24	2.0	24	95	0	85	27	21	17	34	1.95
968189--968235	24	1.9	24	91	4	76	25	21	17	36	1.94
971245--971279	18	1.9	18	88	0	52	54	0	17	28	1.43
976462--976496	18	1.9	18	88	0	52	54	0	17	28	1.43
980522--980595	20	3.7	21	89	7	118	33	24	22	18	1.97
980612--980652	20	2.0	20	100	0	82	51	19	19	9	1.74
980663--980758	33	2.9	34	87	3	140	11	25	20	42	1.85
980864--980900	14	2.6	14	86	0	56	48	21	0	29	1.50
982302--982394	42	2.2	42	80	3	107	22	17	39	20	1.92
982873--982941	20	3.5	20	95	0	129	39	24	20	15	1.92
982981--983134	20	8.4	20	72	18	111	18	20	20	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
984065--984107	21	2.0	21	86	0	59	30	27	25	16	1.97
984134--984171	20	1.9	20	88	0	58	23	34	31	10	1.89
984181--984212	16	1.9	17	93	6	57	75	0	25	0	0.81
984175--984212	13	2.9	13	88	11	60	78	0	21	0	0.74
990896--990938	21	2.0	21	86	0	59	30	27	25	16	1.97
991007--991049	15	3.1	15	74	19	56	79	0	20	0	0.74
991009--991047	12	3.2	12	85	7	53	79	0	20	0	0.73
991005--991049	19	2.4	18	85	7	54	80	0	20	0	0.72
993905--993973	19	3.6	19	80	3	84	50	21	14	13	1.76
994311--994366	21	2.6	22	91	5	96	25	14	39	21	1.91
994570--994653	20	4.2	20	92	0	132	22	19	16	41	1.90
998724--998872	80	1.9	80	80	8	178	33	14	18	33	1.91
998717--998872	40	3.9	40	77	11	142	33	15	18	32	1.92

Tables:   1   2   3   4   5

The End!