genome.fa.s8182.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008182.1 Hibiscus syriacus cultivar Beakdansim tig00110782_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1042344

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 690 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
878439--878608	85	2.0	85	94	0	295	30	16	8	44	1.78
879349--879411	30	2.1	30	85	5	83	33	3	6	57	1.40
884209--884292	22	3.9	21	77	10	71	14	23	36	25	1.92
884231--884291	22	2.7	23	85	10	81	16	24	36	22	1.94
884208--884293	23	3.9	23	77	15	83	15	24	36	24	1.94
910446--910496	16	3.3	16	72	5	52	47	0	1	50	1.12
913724--913760	19	1.9	19	100	0	74	24	27	16	32	1.96
913730--913778	19	2.6	19	83	0	53	22	26	18	32	1.97
917027--917068	15	2.7	15	79	17	50	30	0	0	69	0.89
918859--918895	3	11.7	3	88	11	56	62	0	0	37	0.96
919008--919044	18	2.0	20	84	10	51	35	5	5	54	1.47
919097--919438	187	1.8	189	84	2	474	39	9	11	39	1.74
921170--921219	21	2.5	19	81	12	55	46	10	2	42	1.49
924598--924627	14	2.1	15	93	6	53	43	6	0	50	1.28
925279--925328	23	2.2	23	85	0	64	36	2	0	62	1.07
927417--927459	19	2.2	20	87	4	61	39	2	4	53	1.34
927641--927681	20	2.0	20	90	0	64	19	36	29	14	1.92
927647--927752	35	3.0	36	86	2	144	21	32	26	19	1.97
933195--933305	47	2.4	47	84	3	143	34	17	19	28	1.95
943684--943714	15	2.0	16	93	6	55	0	6	16	77	0.97
944042--944080	19	2.1	19	100	0	78	25	10	43	20	1.83
945728--945770	17	2.5	17	96	0	77	0	9	20	69	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
946957--946992	14	2.6	14	90	0	54	25	13	2	58	1.49
946984--947026	17	2.5	17	85	7	52	16	13	0	69	1.19
949319--949359	22	2.0	21	90	9	66	17	17	19	46	1.85
950692--950777	11	7.3	11	69	20	50	74	3	19	2	1.07
953799--953875	36	2.1	36	92	0	127	31	14	38	15	1.87
953934--953963	2	15.5	2	93	6	53	50	0	0	50	1.00
954862--955574	135	5.3	135	86	1	894	34	16	19	29	1.93
956775--957047	105	2.6	104	80	5	318	26	19	16	38	1.92
959020--959071	20	2.6	20	96	0	95	26	25	11	36	1.90
963064--963234	40	4.3	40	90	0	234	27	9	25	37	1.87
964411--964469	31	1.9	31	85	0	82	27	28	27	16	1.97
965809--965917	54	2.0	54	96	0	200	40	18	11	29	1.86
977829--977898	36	1.9	36	94	5	124	38	10	15	35	1.81
978192--978301	56	1.9	55	84	12	143	30	10	20	38	1.87
979026--979064	19	2.1	19	85	9	53	41	0	10	48	1.37
984164--984212	21	2.3	21	85	0	62	28	26	26	18	1.98
985361--985405	21	2.1	21	100	0	90	24	24	28	22	1.99
988365--988404	21	1.9	21	100	0	80	25	27	25	22	2.00
994330--994422	15	6.3	15	90	2	145	52	1	1	45	1.15
994330--994466	30	4.4	30	80	14	145	48	0	2	48	1.18
994430--994465	14	2.5	14	95	4	63	41	0	0	58	0.98
994356--994465	15	6.9	15	82	14	114	49	0	1	49	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
994445--994762	32	10.4	32	70	24	197	34	0	12	52	1.39
994472--994564	22	3.8	22	71	24	78	36	0	11	51	1.39
994363--994520	69	2.3	67	87	6	221	44	0	5	50	1.24
994425--995597	166	7.2	162	70	19	614	33	0	13	52	1.41
994445--995254	134	6.1	133	77	14	662	34	0	12	52	1.42
994789--994896	32	3.7	32	75	23	137	35	0	12	51	1.40
994494--995584	300	3.9	300	86	10	1330	33	0	13	52	1.42
994544--995597	246	4.3	242	82	8	1190	33	0	13	53	1.42
994822--994864	22	2.0	22	100	0	86	34	0	13	51	1.42
994926--995388	32	14.6	32	71	20	255	33	0	13	53	1.42
994956--994998	22	2.0	22	95	0	77	37	0	11	51	1.39
995113--995160	22	2.4	18	73	23	51	37	0	10	52	1.36
995121--995319	48	3.8	48	69	23	141	32	0	15	51	1.47
995225--995272	22	2.4	18	73	23	51	33	0	14	52	1.42
995234--995324	22	4.0	22	78	10	110	32	0	15	51	1.44
995313--995366	14	3.6	14	72	18	54	37	0	5	57	1.22
994624--995612	134	6.8	137	75	17	460	33	0	13	53	1.42
995304--995580	112	2.5	112	96	0	500	32	0	12	54	1.39
995425--995478	14	3.6	14	72	18	54	37	0	5	57	1.22
995415--995500	32	2.7	32	94	0	145	33	0	11	54	1.37
995560--995602	22	2.0	22	100	0	86	34	0	13	51	1.42
995626--995685	31	1.9	31	93	0	102	43	10	6	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
997743--997856	48	2.3	49	83	4	133	34	30	17	17	1.93
1005030--1005185	65	2.4	65	86	3	208	29	18	23	28	1.98
1006060--1006105	6	7.7	6	100	0	92	50	50	0	0	1.00
1009311--1009344	17	2.0	17	100	0	68	23	11	17	47	1.81
1010022--1010073	3	17.0	3	84	4	68	38	0	1	59	1.08
1010018--1010047	15	2.1	14	93	6	51	46	0	0	53	1.00
1011460--1011485	4	6.5	4	100	0	52	23	0	0	76	0.78
1019656--1019698	20	2.2	19	84	12	59	83	0	16	0	0.64
1019658--1019696	16	2.5	15	84	12	51	87	0	12	0	0.55
1022789--1022938	54	2.8	53	84	4	192	40	11	21	27	1.87
1023706--1024089	45	8.5	45	94	0	660	22	22	20	34	1.97
1024060--1024308	116	2.2	116	91	0	401	29	20	22	28	1.98
1024441--1024498	3	19.0	3	85	3	80	37	0	1	60	1.07
1025341--1025391	8	6.5	8	86	2	68	62	1	21	13	1.40
1032107--1032138	15	2.1	15	100	0	64	28	12	40	18	1.87
1033054--1033283	30	7.7	30	72	10	150	51	3	9	35	1.50
1033054--1033227	87	2.0	90	83	3	228	51	3	10	34	1.54
1033105--1033278	60	2.9	60	80	2	181	54	3	8	33	1.48
1033098--1033264	90	1.9	89	81	8	205	54	3	9	32	1.50
1034333--1034369	12	3.1	12	100	0	74	59	0	0	40	0.97
1040119--1040205	35	2.5	34	78	12	88	56	9	8	26	1.58
1040426--1040469	9	4.9	9	82	0	61	11	36	20	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1040814--1040850	18	2.1	18	100	0	74	21	21	29	27	1.99
1042255--1042296	10	4.2	10	85	11	59	40	0	28	30	1.57

Tables:   1   2   3   4   5   6

The End!