genome.fa.s8192.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008192.1 Hibiscus syriacus cultivar Beakdansim tig00110809_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1702141

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1079 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1516329--1516403	10	7.7	10	72	21	70	10	12	20	57	1.64
1516335--1516399	16	4.1	16	91	0	112	9	12	21	56	1.63
1516471--1516501	16	1.9	16	100	0	62	6	12	22	58	1.58
1517939--1517965	14	1.9	14	100	0	54	33	0	7	59	1.25
1520666--1520697	16	2.0	16	100	0	64	37	25	6	31	1.81
1521266--1521305	21	1.9	21	90	10	64	25	32	30	12	1.92
1523391--1523447	29	1.9	30	82	3	71	38	15	7	38	1.75
1529363--1529415	12	4.6	11	76	4	52	30	26	18	24	1.98
1529343--1529453	35	3.1	35	92	2	168	32	27	17	22	1.96
1529438--1529470	17	1.9	17	100	0	66	30	24	18	27	1.98
1529848--1529878	16	1.9	16	93	0	53	29	16	16	38	1.90
1531499--1531693	7	27.9	7	77	8	146	49	31	1	17	1.57
1536514--1536550	18	2.1	18	89	0	56	35	37	5	21	1.77
1536650--1536722	36	2.1	36	92	2	121	45	17	5	31	1.72
1541890--1541937	2	25.0	2	87	8	73	52	2	0	45	1.12
1545122--1545175	20	2.7	19	75	8	63	33	31	18	16	1.93
1545162--1545294	20	6.5	21	68	17	64	36	23	18	21	1.95
1545225--1545277	20	2.7	20	85	5	72	45	24	16	13	1.83
1545286--1545458	20	8.6	20	79	9	163	37	23	19	20	1.94
1545286--1545458	40	4.3	41	83	3	208	37	23	19	20	1.94
1545929--1545969	20	2.0	20	85	0	55	58	14	12	14	1.63
1546058--1546114	20	2.9	19	84	7	69	12	24	21	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1545992--1546123	19	7.1	19	74	14	123	13	23	18	44	1.85
1548021--1548113	41	2.2	42	83	5	109	22	34	21	21	1.97
1548051--1548113	21	3.0	21	70	9	65	22	36	20	20	1.95
1549424--1549462	14	2.8	14	85	14	62	38	0	17	43	1.50
1549569--1549627	19	3.4	19	71	22	65	45	18	20	15	1.85
1549569--1549658	33	2.7	32	89	3	126	45	22	18	13	1.84
1549601--1549658	19	3.3	18	75	22	61	46	24	15	13	1.82
1549658--1549685	14	2.0	14	100	0	56	14	21	21	42	1.88
1549706--1549780	20	3.7	20	70	19	57	28	14	25	32	1.95
1553153--1553406	20	12.9	19	74	14	155	20	19	22	37	1.94
1553201--1553344	74	1.9	75	91	1	236	18	20	21	40	1.92
1553159--1553425	40	6.8	40	83	9	273	19	19	23	38	1.94
1553392--1553444	20	2.7	20	88	5	72	13	16	24	45	1.83
1553271--1553426	61	2.5	61	77	8	156	17	18	25	38	1.93
1556814--1556873	2	30.0	2	100	0	120	50	0	0	50	1.00
1577339--1577376	5	7.6	5	87	0	58	23	0	2	73	0.95
1577333--1577373	15	2.7	15	84	3	55	26	0	2	70	0.99
1577572--1577665	27	3.2	29	73	16	86	37	15	20	26	1.93
1577547--1577670	58	2.1	58	87	0	176	36	16	22	25	1.94
1577565--1577659	31	3.2	31	75	17	110	37	17	22	22	1.94
1577588--1577680	29	3.2	28	69	21	66	40	16	20	22	1.91
1579601--1579626	13	2.0	13	100	0	52	46	15	15	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1581376--1582219	419	2.0	418	94	2	1480	28	15	18	38	1.91
1584907--1584949	20	2.2	20	86	0	59	55	16	4	23	1.59
1585015--1585200	60	3.1	60	87	0	266	29	21	17	31	1.96
1585346--1585386	21	1.9	21	85	5	55	41	12	9	36	1.76
1590764--1590808	2	23.0	2	95	4	83	48	0	0	51	1.00
1591416--1591518	30	3.4	30	98	0	197	24	19	24	32	1.98
1592592--1592630	19	2.1	19	95	0	69	17	30	17	33	1.94
1597512--1597933	212	2.0	204	95	3	763	33	13	20	32	1.91
1602093--1602331	126	1.9	126	97	0	451	42	21	7	28	1.79
1603354--1603388	15	2.4	15	95	4	63	5	54	22	17	1.64
1606963--1607003	18	2.4	17	91	4	64	63	2	4	29	1.28
1606963--1607016	17	3.1	18	86	7	67	62	3	3	29	1.29
1608201--1608464	104	2.5	107	80	6	304	43	12	9	35	1.74
1608658--1608692	16	2.1	17	94	5	63	34	5	11	48	1.63
1608996--1609044	23	2.1	23	84	0	62	32	14	18	34	1.91
1609037--1609342	74	4.2	71	77	7	260	37	13	8	40	1.76
1609017--1609321	147	2.1	145	79	4	337	37	13	10	38	1.79
1620180--1620418	126	1.9	126	97	0	451	42	21	7	28	1.79
1621450--1621485	15	2.5	15	90	4	56	5	50	22	22	1.70
1625240--1625313	19	3.6	19	72	24	62	60	2	2	33	1.25
1626106--1626549	218	2.0	218	84	5	569	42	12	13	31	1.82
1626509--1626788	108	2.6	107	82	1	326	42	12	10	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1626972--1627007	17	2.1	17	100	0	72	36	5	11	47	1.63
1626989--1627268	155	1.8	156	88	2	429	36	10	11	42	1.75
1627318--1627368	23	2.2	23	85	0	66	31	13	17	37	1.89
1627362--1627675	75	4.2	75	83	0	358	35	13	8	42	1.75
1627358--1627631	150	1.8	150	87	0	395	35	14	9	40	1.77
1627342--1627654	150	2.1	150	82	1	394	36	13	9	39	1.78
1633896--1633956	20	2.9	20	85	7	59	24	32	26	16	1.96
1641781--1641841	23	2.8	23	75	7	65	22	34	24	18	1.96
1641822--1641861	21	1.9	21	89	0	62	25	40	25	10	1.86
1644073--1644105	16	2.1	16	94	0	57	39	0	18	42	1.50
1647987--1648092	52	2.0	52	92	0	176	32	6	15	46	1.71
1649103--1649128	13	2.0	13	100	0	52	30	15	7	46	1.74
1656747--1657059	156	2.0	157	98	0	610	30	22	23	23	1.99
1658738--1658771	12	2.8	12	86	0	50	14	0	23	61	1.33
1660675--1660917	58	4.2	57	80	10	208	42	14	6	36	1.72
1661020--1661182	45	3.6	45	78	7	163	38	17	7	36	1.80
1662595--1662638	19	2.3	20	88	7	65	47	9	0	43	1.35
1665363--1665413	24	2.1	24	89	7	77	45	11	23	19	1.83
1666186--1666245	28	2.3	25	81	13	75	31	6	10	51	1.61
1666191--1666243	28	1.9	28	88	3	81	33	7	11	47	1.68
1668939--1668993	28	2.0	28	82	7	67	21	5	14	58	1.57
1676130--1676163	16	2.1	16	94	0	59	32	26	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1683954--1684016	17	3.6	17	82	4	81	42	7	14	34	1.75
1683959--1684005	18	2.7	18	86	3	69	42	8	14	34	1.77
1693856--1693881	2	13.0	2	100	0	52	50	0	0	50	1.00
1693941--1693978	20	1.9	20	88	0	58	68	5	5	21	1.29
1695127--1695161	11	3.1	11	95	4	61	62	0	0	37	0.95
1695125--1695163	3	13.3	3	84	15	55	61	0	0	38	0.96
1695284--1695399	21	5.6	21	69	10	60	32	27	18	21	1.96
1695387--1695581	20	9.6	20	84	8	82	35	27	18	18	1.95
1695407--1695580	20	8.6	20	87	5	244	33	28	18	18	1.95
1695956--1696026	33	2.2	33	94	0	124	11	23	16	47	1.79
1696106--1696178	21	3.5	20	83	5	101	46	17	20	15	1.84
1696166--1696204	15	2.7	14	84	7	60	43	20	25	10	1.83
1696238--1696294	14	3.7	14	75	20	60	8	24	22	43	1.81
1696221--1696343	33	3.5	33	90	8	165	11	23	18	46	1.81
1696279--1696343	21	3.1	21	77	4	87	12	24	15	47	1.79
1698025--1698326	91	3.3	93	95	3	558	21	13	19	45	1.85
1698484--1698541	19	3.4	19	73	26	74	46	31	15	6	1.72
1698423--1698541	32	3.7	33	81	10	140	45	27	17	9	1.79
1698423--1698540	62	1.9	63	84	5	159	44	27	17	9	1.80
1698537--1698689	18	8.8	18	74	16	110	9	20	23	45	1.81
1698558--1698613	14	3.7	14	76	17	58	10	23	23	42	1.85
1698542--1698632	32	2.8	33	90	5	150	10	21	21	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1698537--1698704	19	9.5	19	75	13	128	10	20	23	45	1.81
1698537--1698704	32	4.7	38	78	10	137	10	20	23	45	1.81
1700590--1700625	14	2.6	14	95	0	63	33	0	22	44	1.53
1700711--1700796	19	4.8	19	75	20	96	47	15	23	13	1.81
1700711--1700815	53	2.0	50	92	5	174	45	16	24	13	1.83
1700805--1701027	19	12.7	19	79	17	236	14	23	17	44	1.85
1700829--1701081	32	7.5	33	72	18	209	13	22	18	45	1.84
1700811--1701081	51	5.3	52	84	10	339	14	22	18	45	1.85
1700829--1701081	70	3.8	64	73	16	210	13	22	18	45	1.84

Tables:   1   2   3   4   5   6   7   8   9

The End!