genome.fa.s8195.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008195.1 Hibiscus syriacus cultivar Beakdansim tig00110814_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1119982

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 689 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253365--253471	42	2.5	42	93	3	180	41	5	5	47	1.50
253365--253462	28	3.5	27	78	8	81	38	6	6	48	1.53
255941--255994	28	1.9	28	84	0	72	42	9	7	40	1.65
256434--256498	31	2.2	29	82	15	73	21	47	18	12	1.81
257169--257219	20	2.5	21	87	3	68	68	7	7	15	1.37
257184--257226	21	2.0	22	81	4	52	67	9	9	13	1.42
261032--261543	256	2.0	255	98	1	990	32	28	18	20	1.96
264546--264611	22	3.0	22	84	2	78	18	37	31	12	1.87
272784--272931	74	2.0	72	96	2	269	45	7	6	39	1.59
273093--273179	38	2.3	38	89	0	138	32	3	16	48	1.63
273545--273578	17	2.0	17	88	0	50	55	2	5	35	1.39
275963--275991	2	14.5	2	100	0	58	51	0	0	48	1.00
278743--278784	2	21.0	2	100	0	84	50	0	0	50	1.00
289485--289543	31	1.9	31	92	0	100	40	6	10	42	1.65
289558--289620	32	2.0	32	100	0	126	53	11	0	34	1.36
289600--289702	22	4.5	22	72	7	89	51	8	0	39	1.33
289645--289771	15	8.5	15	73	21	115	53	2	0	44	1.13
289645--289756	37	3.0	38	82	5	147	53	2	0	43	1.14
311143--311195	25	2.1	25	100	0	106	32	7	11	49	1.67
312540--312593	14	3.7	15	74	18	51	68	5	0	25	1.11
312625--312783	64	2.5	63	92	3	255	56	1	0	41	1.10
312681--312761	24	3.2	25	80	14	96	54	1	0	44	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312684--312754	26	2.8	26	82	16	87	52	1	0	46	1.09
331575--331639	29	2.3	29	81	7	80	36	0	16	46	1.48
331599--331639	14	2.8	15	75	20	50	39	0	17	43	1.49
335099--335171	2	37.5	2	91	5	123	49	1	0	49	1.09
336668--336745	29	2.7	29	74	14	72	17	24	14	43	1.86
346294--346348	28	2.0	28	85	7	76	16	10	16	56	1.67
346684--346709	2	13.0	2	100	0	52	50	0	0	50	1.00
349913--349964	3	17.3	3	82	7	61	36	1	0	61	1.07
349902--349964	18	3.6	17	80	6	72	36	1	0	61	1.05
349913--349965	21	2.5	21	87	6	72	37	1	0	60	1.08
351922--352323	201	2.0	201	100	0	804	33	15	13	37	1.86
356830--357092	132	2.0	132	94	0	463	31	13	20	34	1.91
359230--359474	75	3.3	74	86	3	321	31	15	23	29	1.95
360144--360436	107	2.7	107	82	3	322	35	13	21	29	1.91
360154--360436	53	5.3	53	82	3	273	35	13	21	29	1.92
360797--360854	22	2.6	22	91	5	91	34	15	15	34	1.89
361524--362008	45	10.8	45	93	0	801	23	23	19	34	1.97
361650--361721	20	3.3	20	67	29	58	20	27	19	31	1.97
361951--362388	77	5.8	77	90	3	692	24	18	20	37	1.94
361951--362388	151	2.9	153	90	4	690	24	18	20	37	1.94
362365--362413	25	2.0	25	100	0	98	24	20	18	36	1.94
362290--362482	102	1.9	100	89	4	298	24	18	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364651--364764	49	2.3	49	84	10	146	50	0	1	47	1.11
364742--364816	31	2.5	30	85	12	102	52	2	4	41	1.34
364747--364926	88	2.0	89	83	9	226	48	5	5	41	1.46
364866--364907	22	2.0	21	90	9	68	50	9	4	35	1.56
364895--364947	21	2.5	21	87	0	79	47	5	7	39	1.56
364958--365151	18	11.3	18	77	13	137	45	3	4	46	1.39
365001--365165	2	82.0	2	78	12	169	47	1	4	46	1.32
364969--365155	33	5.7	33	80	11	131	46	3	3	46	1.36
365120--365269	32	5.0	32	69	15	95	42	6	8	42	1.62
365251--365285	18	1.9	18	94	0	61	42	8	8	40	1.66
365290--365411	18	6.8	18	72	20	96	40	7	9	42	1.64
365122--365339	89	2.5	87	78	10	203	42	6	8	42	1.62
365327--365442	29	4.2	29	75	11	109	40	7	8	43	1.64
365380--365473	29	3.3	29	81	14	81	43	6	8	41	1.60
365462--365528	29	2.3	29	80	12	75	52	0	8	38	1.33
365556--365596	2	22.0	2	85	14	61	51	0	0	48	1.00
365782--365839	22	2.8	20	82	10	71	50	6	1	41	1.39
365742--365868	20	6.7	19	70	16	77	44	5	5	44	1.50
365954--366854	215	4.2	216	92	2	1494	29	12	7	50	1.68
367740--367954	26	8.3	26	95	2	380	62	3	4	29	1.31
367740--367951	77	2.7	77	93	0	370	63	3	4	28	1.31
371155--371196	16	2.7	16	79	17	52	59	9	9	21	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371665--371741	30	2.6	30	91	0	118	20	33	10	35	1.87
372961--372991	3	10.3	3	100	0	62	64	0	0	35	0.94
373251--373353	47	2.1	47	82	7	118	34	15	21	28	1.94
373393--373704	48	6.5	48	80	4	358	33	16	21	28	1.95
373386--373704	96	3.3	96	84	4	417	33	16	21	28	1.95
373446--373711	146	1.8	146	87	1	399	33	15	21	29	1.94
373451--373969	261	2.0	258	89	2	799	34	15	21	28	1.94
373645--373771	67	1.9	67	88	0	191	34	15	21	28	1.94
373712--373971	48	5.4	48	81	5	296	33	16	21	28	1.95
373597--373826	115	2.0	115	87	3	329	35	15	20	29	1.93
376445--376711	133	2.0	133	100	0	534	26	21	14	37	1.92
379613--379657	14	3.1	15	84	12	58	28	11	0	60	1.31
379974--380048	23	3.3	23	98	0	141	29	26	25	18	1.98
385638--385676	17	2.3	17	100	0	78	28	35	7	28	1.85
386595--386630	15	2.4	15	90	0	54	16	5	5	72	1.23
386724--386765	22	2.0	22	90	4	68	14	21	23	40	1.90
388137--388169	2	16.5	2	93	0	57	51	45	0	3	1.16
388169--388202	2	17.5	2	87	6	52	50	0	0	50	1.00
390093--390139	23	2.0	23	88	8	69	29	2	12	55	1.49
392605--392991	193	2.0	191	94	5	690	34	20	20	24	1.97
393810--393904	44	2.2	44	90	3	147	30	14	18	35	1.91
397044--397088	20	2.2	20	84	7	56	15	20	0	64	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400286--400332	23	2.0	23	84	8	60	27	2	14	55	1.51
400826--400856	11	2.8	11	95	0	53	16	9	9	64	1.48
410985--411056	10	7.6	9	76	11	72	15	27	29	27	1.96
410984--411056	19	3.8	20	84	12	89	16	27	28	27	1.97
411022--411061	19	2.1	19	95	0	71	20	25	32	22	1.98
411079--411121	22	2.0	22	100	0	86	18	48	23	9	1.76
411059--411109	17	2.8	18	91	5	77	21	49	19	9	1.77
411111--411147	7	5.4	7	93	6	67	16	29	27	27	1.97
411111--411147	13	2.7	14	91	8	67	16	29	27	27	1.97
413324--413386	24	2.6	24	87	0	90	23	9	22	44	1.82
413413--413716	156	1.9	156	89	1	466	20	12	31	35	1.90
413725--413749	13	1.9	13	100	0	50	48	0	12	40	1.40
415710--415781	37	1.9	37	91	0	117	19	26	23	30	1.98
418045--418123	24	3.3	24	85	7	106	26	12	18	41	1.87
418150--418456	157	2.0	156	89	0	470	21	12	29	36	1.90
421677--421728	18	2.9	18	94	0	86	19	17	34	28	1.94
423706--423775	7	10.0	7	100	0	140	57	0	42	0	0.99
426348--426525	96	1.9	94	86	2	257	24	19	17	38	1.93
427921--427990	30	2.4	28	77	13	70	48	2	0	48	1.16
427938--427991	14	3.6	15	85	7	74	48	1	0	50	1.11
428051--428092	19	2.2	20	86	4	59	61	4	4	28	1.36
428327--428353	14	1.9	14	100	0	54	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437717--437751	3	11.7	3	100	0	70	34	0	0	65	0.93
439951--440242	148	2.0	144	95	4	523	37	14	12	35	1.84
441038--441104	35	1.9	34	87	3	98	20	13	16	49	1.79
441146--441684	45	12.0	45	83	2	566	25	15	18	40	1.90
441146--441669	179	2.9	178	82	4	617	25	15	18	40	1.91
441175--441673	224	2.2	224	82	2	574	24	15	19	40	1.90
442260--442352	38	2.4	39	82	3	109	24	22	12	39	1.89
443150--443174	3	8.3	3	100	0	50	32	0	0	68	0.90
443617--443668	21	2.5	20	76	11	52	48	11	30	9	1.72
444837--444928	46	2.0	46	100	0	184	41	17	10	30	1.84

Tables:   1   2   3   4   5   6