genome.fa.s8195.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008195.1 Hibiscus syriacus cultivar Beakdansim tig00110814_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1119982

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 689 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588287--588353	21	3.2	21	66	6	55	23	35	20	19	1.95
588235--588353	42	2.8	42	81	5	107	22	36	19	21	1.95
589711--589746	14	2.6	14	95	0	63	30	0	25	44	1.54
589871--589927	14	3.7	14	75	20	60	45	19	24	10	1.81
589853--589942	33	2.7	33	87	0	135	44	18	22	14	1.86
589938--590088	19	8.7	19	61	21	62	15	21	19	42	1.89
589942--590064	33	3.8	32	87	8	185	15	22	18	43	1.88
589935--590064	66	2.0	66	96	0	242	16	22	18	42	1.89
592359--592383	12	2.1	12	100	0	50	0	28	0	72	0.86
592558--592611	24	2.2	24	90	0	81	40	20	16	22	1.91
593415--593493	20	3.9	20	77	9	70	35	22	18	22	1.96
593700--593803	40	2.9	34	73	15	100	40	21	20	18	1.92
593797--593867	33	2.2	33	81	0	79	22	18	18	40	1.91
595892--595945	20	2.7	20	94	0	90	38	22	22	16	1.93
595890--595990	20	5.5	18	74	17	75	43	21	19	14	1.87
595949--596006	14	3.8	14	73	20	53	50	24	15	10	1.75
595932--596022	33	2.8	33	89	0	137	47	25	16	10	1.79
596042--596097	14	3.7	14	78	17	67	10	14	23	51	1.73
596023--596109	32	2.7	33	96	3	167	12	17	20	49	1.79
596634--596696	18	3.5	18	93	0	99	14	14	44	26	1.83
598018--598060	20	2.2	20	86	0	59	48	20	18	11	1.79
598028--598100	20	3.7	20	92	0	110	35	24	19	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598326--598369	22	2.0	22	95	0	79	18	15	45	20	1.85
598537--598630	41	2.3	41	86	0	143	22	18	23	36	1.95
598537--598651	20	5.7	20	76	9	99	23	19	22	34	1.96
598537--598654	61	1.9	62	84	5	159	22	18	22	36	1.95
598722--598762	21	2.0	21	85	0	55	34	29	17	19	1.94
598746--598779	12	2.8	12	100	0	68	41	26	26	5	1.78
603254--603286	17	1.9	17	93	0	57	15	27	48	9	1.74
603901--604066	54	3.2	54	77	10	157	23	22	19	33	1.97
604032--604357	55	5.9	55	95	1	575	27	25	15	31	1.96
605315--605399	29	2.7	31	73	21	88	11	14	0	74	1.08
605318--605372	15	4.0	14	84	11	60	14	5	0	80	0.89
606938--607300	181	2.0	181	100	0	726	28	26	18	26	1.98
615322--615359	16	2.3	16	95	4	67	36	28	7	26	1.84
618907--618952	2	23.5	2	91	4	76	50	0	0	50	1.00
620309--620339	16	2.0	16	93	6	55	25	19	6	48	1.72
621627--621686	29	2.1	29	100	0	120	25	13	11	50	1.75
625163--625212	23	2.2	23	85	0	64	40	6	20	34	1.77
625126--625287	87	1.9	86	90	3	263	41	11	14	33	1.81
625607--625764	73	2.2	72	82	10	180	29	21	17	32	1.96
628519--629250	251	3.0	247	87	4	984	30	16	15	38	1.89
631910--632649	201	3.7	201	95	0	1300	32	17	13	36	1.89
634729--634794	33	2.0	33	87	0	96	24	43	0	31	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
634828--634871	21	2.1	21	91	0	70	15	31	11	40	1.83
637057--637111	20	2.8	20	91	0	92	21	14	12	50	1.76
638955--638985	6	5.3	6	92	7	55	48	0	51	0	1.00
640297--640331	16	2.2	16	100	0	70	28	48	0	22	1.51
640443--640475	16	1.9	17	88	11	50	36	0	3	60	1.12
640438--640477	17	2.3	19	79	16	50	32	0	2	65	1.06
644094--644170	34	2.2	34	84	11	95	19	1	18	61	1.42
644165--644247	35	2.4	36	79	18	95	27	9	8	54	1.62
656529--656575	20	2.4	19	79	10	58	53	8	17	21	1.70
656317--656790	182	2.6	183	88	1	684	42	13	16	27	1.86
656711--656757	20	2.4	19	82	10	67	53	10	17	19	1.72
656720--656762	20	2.3	19	88	11	63	51	11	16	20	1.75
658899--658963	21	3.1	21	93	0	103	41	10	30	16	1.83
658997--659062	33	2.0	33	90	0	105	28	0	48	22	1.51
660860--660908	19	2.6	19	96	0	89	32	2	10	55	1.45
661027--662203	200	5.9	200	97	0	2246	36	14	17	31	1.90
663665--663728	6	10.7	6	79	0	65	39	9	32	18	1.83
663665--663746	12	6.8	12	82	0	101	37	9	32	19	1.85
663665--663746	36	2.3	36	93	0	137	37	9	32	19	1.85
663665--663759	12	7.8	13	79	9	87	37	8	31	22	1.84
663682--663762	6	13.5	6	80	0	72	37	7	32	23	1.83
664963--666452	183	8.1	183	96	0	2662	35	14	16	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669235--669307	23	3.2	23	90	0	110	35	5	20	38	1.76
669730--669797	23	3.0	23	88	0	100	33	4	22	39	1.74
669027--669963	490	1.9	490	97	0	1761	40	7	11	39	1.70
670163--670227	23	2.8	23	90	0	103	35	6	20	38	1.77
670155--670232	23	3.5	22	85	3	95	35	5	20	38	1.75
669517--672235	430	6.0	431	69	16	1955	40	7	12	39	1.71
670650--670717	23	3.0	23	86	0	91	33	4	20	41	1.72
668948--675402	920	6.8	920	93	4	9684	40	7	11	40	1.70
669947--670883	490	1.9	490	96	0	1732	40	7	11	39	1.70
671076--671148	23	3.2	23	88	0	101	35	5	19	39	1.75
670437--672235	431	4.0	431	76	12	1962	40	7	12	39	1.71
671572--671639	23	3.0	23	86	0	91	33	4	20	41	1.72
670867--671805	491	1.9	491	95	0	1709	40	7	11	40	1.69
672005--672069	23	2.8	23	92	0	112	33	6	21	38	1.78
672487--672559	23	3.2	23	90	0	110	34	5	20	39	1.76
672977--673049	23	3.2	23	92	0	119	34	5	21	38	1.77
673474--673538	23	2.8	23	90	0	103	35	6	20	38	1.77
673466--673543	23	3.5	22	85	3	95	35	5	20	38	1.75
671789--675402	489	7.4	489	98	0	6880	40	7	11	40	1.70
671789--675402	979	3.7	979	97	0	6884	40	7	11	40	1.70
673955--674027	23	3.2	23	90	0	110	35	5	20	38	1.76
674441--674513	23	3.2	23	90	0	110	35	5	20	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
674928--675000	23	3.2	23	92	0	119	34	5	21	38	1.77
679129--679187	31	2.0	28	83	9	73	23	20	25	30	1.98
680124--680238	58	2.0	58	86	6	162	35	10	13	40	1.80
690568--690623	21	2.7	21	78	13	62	25	23	17	33	1.96
691232--691278	20	2.3	20	92	0	76	36	21	19	23	1.95
691303--691357	20	2.8	20	85	0	74	20	18	25	36	1.94
691341--691379	20	2.0	20	89	0	60	12	12	17	56	1.67
693264--693352	20	4.8	20	77	16	109	38	21	21	19	1.94
693857--693961	21	5.0	20	68	12	68	20	36	19	23	1.95
693853--693964	42	2.7	41	77	9	111	20	37	18	23	1.94
695316--695351	14	2.6	14	90	0	54	30	0	22	47	1.52
695453--695528	33	2.3	34	90	2	118	44	18	22	14	1.86
695707--695743	19	1.9	19	100	0	74	48	10	21	18	1.78
695779--695874	33	2.8	33	87	3	120	14	22	19	42	1.88
695848--695934	20	4.3	20	85	2	122	18	22	24	34	1.96
695846--695934	40	2.2	40	88	4	135	19	23	23	33	1.97
698385--698436	24	2.2	24	82	0	59	36	21	19	23	1.95
699232--699281	20	2.5	20	100	0	100	24	18	20	38	1.93
699277--699319	21	2.0	21	86	4	59	37	16	25	20	1.93
704851--704904	27	2.0	27	100	0	108	29	18	29	22	1.97
708282--708351	30	2.3	30	80	4	79	40	7	2	50	1.45
708868--708923	25	2.3	25	84	6	71	33	17	3	44	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
722858--722888	15	2.1	15	93	0	53	45	0	0	54	0.99
723139--723222	39	2.2	39	85	4	109	36	16	4	41	1.70
733933--734183	129	1.9	130	93	0	432	41	7	12	38	1.71
736660--736750	47	1.9	48	88	2	139	37	2	16	43	1.60
742580--742823	32	7.7	32	86	3	325	25	18	20	34	1.96
743611--743661	19	2.7	19	81	0	66	33	11	7	47	1.69
749356--749405	2	25.5	2	91	4	75	44	0	0	56	0.99
749486--749845	74	4.9	76	80	11	326	43	4	5	47	1.44
749486--749845	36	9.7	38	76	12	333	43	4	5	47	1.44
749666--749730	29	2.3	27	84	5	85	47	3	3	46	1.33

Tables:   1   2   3   4   5   6