genome.fa.s8226.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008226.1 Hibiscus syriacus cultivar Beakdansim tig00110860_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  835745

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 494 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269030--269059	14	2.1	14	93	0	51	23	33	6	36	1.81
280234--280288	11	5.2	11	74	14	53	5	34	0	60	1.20
280225--280304	30	2.8	28	83	9	99	5	33	0	61	1.18
280237--280296	30	2.0	30	96	0	111	3	35	0	61	1.12
287576--287616	22	1.9	21	85	5	55	17	12	9	60	1.57
288804--288842	20	2.0	20	85	10	53	38	25	2	33	1.70
290714--290792	15	5.3	15	67	11	63	21	34	5	39	1.75
290655--291019	60	6.1	60	77	6	321	25	33	5	36	1.78
290661--290994	120	2.8	120	86	0	445	25	32	5	36	1.79
290864--290913	15	3.3	15	72	10	57	18	36	8	38	1.80
290689--291019	30	11.0	30	81	5	289	25	34	5	35	1.78
292073--292225	77	2.0	77	98	0	297	47	18	7	27	1.75
294194--294250	25	2.3	25	80	14	73	42	3	8	45	1.52
300850--300907	29	2.0	30	89	3	91	15	22	18	43	1.88
301987--302017	16	1.9	16	93	0	53	70	0	12	16	1.16
303948--304139	20	9.6	20	72	5	145	42	23	13	20	1.88
303948--304139	40	4.8	41	78	8	171	42	23	13	20	1.88
303966--304139	61	2.9	62	80	9	189	40	23	14	21	1.90
304299--304349	22	2.3	22	93	0	93	23	45	11	19	1.83
304731--304762	14	2.3	14	94	0	55	6	21	21	50	1.71
306918--307000	21	4.0	20	80	10	96	18	36	20	25	1.95
306922--307014	42	2.2	41	85	9	118	20	35	20	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308343--308516	66	2.6	67	89	8	241	27	2	17	52	1.57
308373--308516	66	2.2	65	93	2	245	29	1	18	50	1.55
308594--308632	13	2.9	14	82	17	55	7	20	30	41	1.80
308837--308872	18	2.0	18	94	0	63	19	0	25	55	1.43
311140--311193	24	2.2	24	90	0	81	42	20	16	20	1.89
311947--311984	16	2.5	15	84	12	51	65	0	5	28	1.14
312160--312209	20	2.5	20	83	3	66	30	8	24	38	1.84
312239--312310	20	3.6	20	85	10	103	19	11	25	44	1.83
312508--312573	34	1.9	34	90	0	105	24	15	24	36	1.93
313001--313038	7	5.4	7	100	0	76	26	13	0	60	1.33
312994--313038	21	2.1	21	91	0	72	24	17	0	57	1.40
324218--324251	8	4.4	8	88	7	52	35	0	0	64	0.94
324220--324251	15	2.1	15	94	0	55	34	0	0	65	0.93
324417--324459	21	2.0	21	86	0	59	46	13	2	37	1.57
330335--331002	332	2.0	333	98	1	1295	28	26	20	25	1.99
341531--341694	80	2.1	79	90	3	258	39	17	12	31	1.86
344657--344726	24	2.7	27	84	10	92	42	0	2	54	1.15
344654--344792	64	2.2	65	93	2	244	43	0	2	53	1.17
358186--358254	19	3.6	19	73	21	63	39	2	2	55	1.30
358613--358656	21	2.0	22	91	4	72	40	13	2	43	1.57
358729--358768	21	1.9	21	89	0	62	42	10	10	37	1.72
360289--360314	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362617--362784	84	2.0	84	96	0	309	27	11	12	48	1.76
364271--364322	22	2.3	22	83	3	59	53	5	1	38	1.36
364274--364329	22	2.6	21	75	8	58	55	7	1	35	1.38
367530--367576	20	2.4	19	79	10	58	53	8	17	21	1.70
367318--367790	181	2.6	181	89	1	707	42	13	16	27	1.86
367711--367757	20	2.4	19	82	10	67	53	10	17	19	1.72
367722--367762	20	2.2	19	83	12	50	51	14	17	17	1.77
368502--369270	183	4.2	183	92	1	1217	35	14	16	33	1.89
369148--369390	120	2.0	120	91	0	396	32	13	15	38	1.87
368961--369555	303	2.0	303	93	0	1021	34	14	16	34	1.89
372895--373057	87	1.9	87	88	2	247	34	12	8	43	1.74
372979--373023	23	2.0	23	86	0	63	37	15	8	37	1.79
375373--375401	2	14.5	2	100	0	58	51	0	0	48	1.00
381449--381503	12	4.8	12	76	19	55	41	0	0	58	0.98
381447--381503	15	3.6	15	83	7	69	40	0	0	59	0.97
381447--381491	3	15.0	3	90	0	72	37	0	0	62	0.96
382982--383049	15	4.5	15	70	14	50	29	4	1	64	1.21
383191--383253	33	2.0	33	84	6	85	41	0	1	57	1.08
383838--383877	17	2.4	17	84	15	57	27	2	0	70	1.01
391173--391505	114	2.9	114	91	0	542	34	14	18	32	1.91
393385--393487	54	1.9	53	88	5	154	37	14	23	24	1.92
393907--393962	23	2.5	23	91	2	96	33	10	14	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394476--394790	161	2.0	161	87	3	456	34	13	13	38	1.85
394793--395564	223	3.5	224	90	4	1183	23	18	22	34	1.96
394793--395565	299	2.6	298	90	5	1181	23	18	22	35	1.96
394793--395565	74	10.4	76	89	6	1165	23	18	22	35	1.96
395708--395765	12	4.8	12	74	21	59	46	0	0	53	1.00
395706--395747	15	2.8	15	96	0	75	45	0	0	54	0.99
395706--395753	3	16.0	3	77	0	51	43	0	0	56	0.99
408351--408443	21	4.6	20	79	4	105	39	18	23	18	1.92
408348--408443	41	2.3	41	96	0	174	40	17	22	18	1.91
408370--408504	41	3.3	41	81	6	123	38	20	20	20	1.94
408432--408526	20	4.7	20	80	2	91	34	24	17	23	1.96
408714--408757	22	2.0	22	95	0	79	20	45	15	18	1.85
409021--409058	20	1.9	20	88	0	58	13	15	21	50	1.78
410377--410421	18	2.5	18	81	0	54	28	40	15	15	1.88
410894--410949	20	2.8	20	83	2	69	37	23	23	16	1.93
410933--411024	19	5.5	19	65	28	64	45	21	19	13	1.84
410933--411024	32	2.8	33	90	4	152	45	21	19	13	1.84
411039--411096	14	3.9	14	79	16	71	8	17	25	48	1.75
411034--411112	32	2.4	33	95	2	142	10	18	24	46	1.80
411055--411154	19	5.5	19	75	12	68	14	20	22	44	1.86
411097--411151	20	2.8	19	86	5	74	18	23	21	36	1.95
413528--413563	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413670--413746	14	4.7	15	74	22	59	45	19	22	12	1.84
413680--413746	18	3.8	19	81	18	92	46	17	22	13	1.83
413772--413822	20	2.5	20	96	0	93	21	23	21	33	1.97
414147--414182	14	2.6	14	90	0	54	30	0	22	47	1.52
415422--415480	24	2.5	24	82	0	73	28	16	18	35	1.93
417954--418051	19	5.7	19	69	22	90	43	19	24	12	1.85
417954--418047	33	2.8	33	98	0	179	43	19	24	12	1.85
418047--418089	20	2.2	20	87	4	61	16	18	23	41	1.89
418075--418108	14	2.4	14	85	0	50	8	23	20	47	1.78
418230--418266	14	2.6	14	91	0	65	45	24	0	29	1.53
419622--419688	21	3.2	21	68	4	55	19	20	35	23	1.95
419622--419744	42	2.9	41	80	7	113	22	17	36	22	1.95
421744--421947	19	11.1	19	79	13	203	43	21	22	12	1.86
421744--421947	33	5.6	38	83	9	203	43	21	22	12	1.86
421943--421987	19	2.4	19	92	0	72	8	15	26	48	1.74
422545--422638	20	4.7	20	80	2	89	23	18	24	34	1.96
422566--422700	41	3.3	41	81	4	130	20	21	20	37	1.94
422627--422719	20	4.6	20	78	4	96	18	24	18	38	1.92
422627--422722	41	2.3	41	98	0	183	18	23	17	39	1.92
426163--426198	18	2.0	18	88	0	54	30	33	16	19	1.94
426758--426891	64	2.1	62	85	8	173	26	20	19	33	1.96
432974--433044	18	3.8	18	80	7	79	33	30	15	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433595--433728	64	2.1	62	82	10	157	26	19	20	34	1.96
434564--434922	198	1.8	198	85	0	511	40	9	15	34	1.80
434772--435099	177	1.9	177	86	0	476	39	11	16	32	1.84
436058--436098	17	2.7	15	82	17	57	4	14	34	46	1.66
436518--436831	142	2.2	144	88	2	461	35	14	14	35	1.86
436776--438058	198	6.5	198	89	1	1736	40	12	12	34	1.81
437548--437586	20	2.0	20	89	0	60	33	5	12	48	1.63
438062--438382	131	2.4	130	88	5	468	42	13	12	31	1.82
448379--448591	80	2.7	80	92	0	345	32	17	20	29	1.96
448994--449223	53	4.4	53	84	2	302	28	21	26	23	1.99

Tables:   1   2   3   4   5