genome.fa.s8226.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008226.1 Hibiscus syriacus cultivar Beakdansim tig00110860_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  835745

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 494 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
606091--606382	152	1.9	151	90	6	466	50	8	4	36	1.54
610594--610643	24	2.0	25	84	3	66	20	54	20	6	1.65
614229--614659	107	4.0	107	96	0	785	32	10	10	45	1.73
614229--614659	213	2.0	213	96	0	801	32	10	10	45	1.73
616389--616430	18	2.3	18	87	0	57	9	30	33	26	1.88
617511--617597	22	3.8	22	78	11	102	51	14	0	33	1.43
617515--617603	26	3.6	26	71	11	87	52	16	0	30	1.44
617515--617618	48	2.2	49	86	8	151	55	15	0	28	1.40
617607--617696	18	5.4	18	61	28	56	56	5	1	36	1.30
617611--617696	14	5.6	14	70	20	64	55	5	1	37	1.31
617612--617942	32	11.0	32	75	20	256	53	14	0	32	1.44
617653--617791	74	1.9	74	92	0	233	55	12	0	31	1.42
617731--617787	18	3.4	18	72	18	68	59	14	0	26	1.35
617581--617774	106	1.8	104	88	6	293	55	11	0	32	1.40
617729--617858	56	2.3	57	88	7	185	53	17	0	28	1.44
617820--617964	26	5.5	26	72	18	120	53	17	0	28	1.45
617896--617987	25	3.8	25	74	17	104	50	17	0	32	1.47
617759--617965	80	2.5	81	77	12	242	52	17	0	30	1.45
617811--618051	106	2.2	108	85	13	345	51	15	0	32	1.43
617819--617988	47	3.4	48	81	15	225	52	17	0	30	1.44
617968--618051	32	2.6	32	84	15	120	51	13	0	35	1.41
617968--618091	32	4.3	29	76	22	118	49	10	0	40	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617968--618041	35	2.3	32	86	13	100	52	10	0	36	1.36
618667--618813	60	2.5	60	75	8	147	34	13	12	39	1.83
622792--622829	20	1.9	20	84	10	51	36	5	10	47	1.61
624066--624092	2	13.5	2	100	0	54	48	0	0	51	1.00
629733--629766	16	2.1	16	94	0	59	32	8	26	32	1.87
645160--645193	9	3.8	9	92	0	59	23	0	0	76	0.79
647261--647418	21	7.8	20	72	7	86	38	25	17	18	1.92
647385--647578	20	9.6	20	81	5	221	35	25	19	19	1.95
647385--647578	60	3.2	60	83	0	253	35	25	19	19	1.95
647724--647766	21	2.0	21	90	0	68	23	39	13	23	1.90
647955--648023	32	2.2	32	89	0	102	11	23	18	46	1.82
647955--648004	18	3.0	18	69	22	54	12	22	22	44	1.85
648106--648215	21	5.8	20	74	17	108	45	18	24	11	1.83
648099--648215	41	3.1	38	81	14	145	46	17	25	11	1.81
648166--648222	14	3.7	14	75	20	60	43	22	24	8	1.81
648158--648238	33	2.5	33	95	0	144	46	22	22	8	1.78
648234--648369	19	7.9	19	75	21	131	10	25	19	44	1.82
648239--648331	33	2.8	33	96	0	168	9	23	20	46	1.80
648265--648369	52	2.0	52	98	0	201	9	25	19	45	1.80
650265--650297	17	1.9	17	88	11	50	30	18	12	39	1.87
650055--650434	93	4.1	93	97	0	726	22	12	18	45	1.83
650534--650590	14	3.7	14	77	20	60	45	22	21	10	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
650515--650607	33	2.8	33	95	0	168	47	21	20	10	1.80
650478--650612	19	7.6	19	76	16	128	45	23	19	11	1.82
650608--650734	19	7.3	19	73	18	114	8	17	29	44	1.78
650608--650699	33	2.8	33	93	3	150	7	18	28	45	1.76
652647--652682	14	2.6	14	95	0	63	33	0	22	44	1.53
652789--652888	19	5.5	19	84	12	147	45	17	23	15	1.85
652789--652905	53	2.2	53	95	1	209	43	17	24	14	1.86
652895--653061	19	9.6	19	76	19	168	14	23	17	43	1.87
652895--653061	51	3.2	52	95	2	300	14	23	17	43	1.87
653120--653197	19	4.4	19	81	15	112	46	17	21	14	1.84
653157--653211	14	3.6	14	73	21	56	45	20	23	10	1.82
653138--653216	33	2.4	33	100	0	158	44	18	24	12	1.85
655514--655538	12	2.1	12	100	0	50	0	28	0	72	0.86
655713--655759	24	2.0	24	87	8	69	38	21	14	25	1.92
656442--656691	20	12.5	20	85	1	259	20	17	24	37	1.94
660502--660578	30	2.5	31	83	8	95	48	1	5	45	1.33
660492--660592	31	3.3	31	78	8	107	49	2	5	41	1.42
671109--671158	18	2.8	18	87	0	73	32	14	32	22	1.93
672799--672875	38	2.0	38	100	0	154	23	23	29	23	1.99
672895--672972	29	2.6	30	85	6	113	26	43	15	14	1.85
672895--673001	29	3.6	29	83	2	106	26	41	17	14	1.89
673017--673079	32	2.0	32	96	0	117	15	31	23	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
673067--673110	23	1.9	23	100	0	88	22	22	27	27	1.99
673527--673588	28	2.1	30	94	5	110	30	0	12	56	1.37
673881--673925	21	2.2	21	84	4	56	35	0	8	55	1.31
687194--687564	21	18.2	19	64	19	58	41	0	12	46	1.42
687163--687917	49	14.3	49	77	16	512	41	0	12	45	1.41
687159--687947	60	13.7	60	73	15	378	41	0	12	46	1.41
687223--687651	109	3.9	109	87	7	603	42	0	12	45	1.42
687163--687921	169	4.4	168	78	9	798	41	0	12	45	1.41
687441--687467	10	2.7	10	100	0	54	40	0	18	40	1.51
687332--687947	60	10.6	59	73	14	419	42	0	11	45	1.41
687609--687716	28	3.8	28	78	3	117	46	0	13	39	1.44
687620--687667	10	5.0	10	77	10	55	54	0	12	33	1.38
687568--687837	87	2.9	89	81	11	337	43	0	11	44	1.41
687502--687917	136	2.9	142	87	9	535	42	0	11	46	1.39
687637--687921	109	2.6	109	90	5	393	41	0	11	46	1.41
687803--687917	48	2.3	49	92	2	187	40	0	11	47	1.39
687889--687936	14	3.6	14	81	16	66	35	0	16	47	1.47
687694--687921	109	2.1	109	98	0	440	40	0	11	47	1.40
690379--690419	22	1.9	21	85	5	55	53	19	0	26	1.45
690548--690624	26	2.6	31	76	23	101	5	36	6	51	1.50
693808--693845	20	1.9	20	88	0	58	18	10	5	65	1.41
704378--704418	18	2.4	18	88	8	59	29	29	0	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
719900--719933	16	2.1	17	88	5	52	32	2	5	58	1.37
728838--728866	14	2.0	15	93	6	51	41	0	13	44	1.44
737071--737111	8	5.2	8	82	5	57	34	0	29	36	1.58
737182--737680	127	3.9	128	98	1	975	22	25	19	31	1.98
738081--738180	33	3.0	34	83	2	139	39	3	4	54	1.35
738706--738787	21	3.9	21	93	3	121	21	23	36	18	1.95
738700--738793	21	4.5	21	89	5	120	21	25	35	18	1.95
740554--740640	15	5.4	16	73	16	63	58	2	0	39	1.11
740567--740649	32	2.6	32	80	5	96	59	2	0	38	1.11
740567--740640	33	2.3	34	83	6	100	60	1	0	37	1.05
748533--748570	2	19.0	2	100	0	76	50	0	0	50	1.00
750903--750960	23	2.5	23	88	0	80	31	24	24	20	1.98
750909--750964	23	2.4	23	87	0	85	32	26	25	16	1.96
752588--752650	16	3.9	16	73	19	60	36	4	0	58	1.19
755375--755420	15	3.1	15	78	6	58	43	8	17	30	1.79
755429--755462	14	2.4	14	90	0	50	35	14	17	32	1.91
755772--755875	10	10.3	10	66	26	51	49	2	0	48	1.16
755763--755824	24	2.7	22	80	9	70	46	1	0	51	1.10
755836--755909	29	2.4	32	78	17	93	54	1	0	44	1.08
755893--755948	17	3.1	17	76	23	60	42	0	1	55	1.10
761452--762541	544	2.0	544	99	0	2153	33	23	16	25	1.96
772148--772245	24	4.1	24	92	5	162	22	17	20	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
772148--772259	24	4.7	24	89	6	120	22	16	20	40	1.91
772148--772279	48	2.8	48	84	4	151	25	15	19	40	1.90
772444--772471	2	14.0	2	100	0	56	50	0	0	50	1.00
776871--776975	48	2.2	48	89	0	156	25	12	20	40	1.88
776871--776975	24	4.4	24	88	0	138	25	12	20	40	1.88
779541--779629	21	4.3	21	81	5	110	21	20	25	32	1.97
779541--779642	21	5.0	21	70	9	66	22	21	23	32	1.98
779888--780065	65	2.7	65	97	0	338	30	20	11	38	1.87
780107--780197	19	4.4	20	76	17	105	30	28	5	35	1.80
780118--780199	44	1.9	41	87	7	119	32	29	6	31	1.82

Tables:   1   2   3   4   5