genome.fa.s8226.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008226.1 Hibiscus syriacus cultivar Beakdansim tig00110860_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  835745

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 494 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448996--449185	104	1.8	105	90	1	310	28	22	26	22	1.99
458685--458711	2	13.5	2	100	0	54	48	0	0	51	1.00
460032--460070	12	3.2	12	85	14	53	56	2	0	41	1.13
460701--460736	10	3.6	10	84	0	54	63	22	13	0	1.29
460701--460740	20	2.0	20	100	0	80	60	20	20	0	1.37
462578--462696	58	2.1	58	96	0	220	34	10	21	32	1.89
466687--466740	23	2.3	23	84	6	65	31	25	25	16	1.97
466706--466749	23	1.9	23	90	0	70	25	25	29	20	1.99
467785--467993	64	3.3	64	83	4	217	34	20	17	27	1.95
468287--468359	24	3.1	24	80	9	71	36	4	23	35	1.74
468301--468336	12	3.0	12	91	0	63	33	5	25	36	1.79
468301--468369	24	2.8	26	83	12	85	37	5	24	31	1.79
468481--468513	15	2.2	15	100	0	66	15	18	33	33	1.92
474668--474884	64	3.4	64	78	3	197	35	18	17	29	1.94
475197--475241	12	3.9	12	85	11	67	35	2	24	37	1.68
475196--475241	17	2.7	17	74	12	58	34	4	23	36	1.75
475222--475274	23	2.2	26	90	10	85	39	5	24	30	1.78
475387--475419	15	2.2	15	100	0	66	15	18	33	33	1.92
480952--481020	35	1.9	37	88	5	106	42	15	14	27	1.86
481509--481539	15	2.1	15	93	0	53	35	0	0	64	0.94
481716--481749	16	2.1	16	88	0	50	32	5	0	61	1.20
481730--481780	21	2.4	22	83	3	68	29	3	1	64	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483172--483199	5	5.6	5	100	0	56	17	0	0	82	0.68
485098--485159	23	2.7	22	80	9	72	79	6	14	0	0.93
485098--485166	20	3.2	20	82	10	66	79	5	13	1	0.97
485778--485828	22	2.3	22	93	0	84	35	25	11	27	1.91
486688--486797	37	3.0	37	87	2	159	27	22	11	38	1.89
486824--487098	37	7.9	37	67	23	168	29	20	13	37	1.90
486723--487163	102	4.3	102	94	0	774	29	20	12	36	1.90
487070--487227	65	2.5	64	93	1	271	32	20	11	35	1.89
487335--487406	37	1.9	37	82	0	90	26	22	11	40	1.87
487729--488065	160	2.1	160	94	0	593	32	24	21	21	1.98
487889--488390	106	4.9	104	78	7	504	33	23	20	22	1.98
487888--488390	206	2.5	202	83	3	603	33	23	20	22	1.98
488851--488919	35	1.9	37	88	5	106	42	15	14	27	1.86
489408--489438	15	2.1	15	93	0	53	35	0	0	64	0.94
489615--489648	16	2.1	16	88	0	50	32	5	0	61	1.20
494415--494465	22	2.3	22	96	0	93	21	43	13	21	1.87
494726--494767	19	2.2	19	91	8	68	42	26	19	11	1.85
495127--495162	14	2.6	14	100	0	72	25	0	22	52	1.47
497109--497153	21	2.1	21	87	0	63	31	28	24	15	1.96
498344--498471	31	4.1	31	80	9	152	26	18	21	33	1.96
498430--498526	30	3.2	30	88	1	113	22	20	24	31	1.98
498457--498529	30	2.4	30	95	0	128	24	20	24	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499629--499670	4	10.5	4	84	0	57	28	0	2	69	1.01
499820--499872	21	2.5	21	93	6	90	20	28	22	28	1.99
501355--501394	14	2.9	14	80	0	53	30	0	17	52	1.45
501304--501445	67	2.2	64	82	9	166	30	1	16	50	1.54
501528--501570	20	2.2	20	100	0	86	13	18	25	41	1.88
501745--501831	39	2.2	39	95	0	156	18	14	19	47	1.83
502099--502135	18	2.1	18	89	0	56	51	10	5	32	1.60
503122--503175	24	2.2	24	86	0	72	44	16	14	24	1.85
504085--504148	19	3.3	20	78	8	62	28	15	20	35	1.93
504092--504151	20	3.0	20	82	4	77	26	15	21	36	1.93
504095--504178	39	2.1	40	84	6	109	23	17	21	36	1.94
504095--504178	20	4.2	20	81	6	73	23	17	21	36	1.94
505231--505375	71	2.0	71	98	0	281	30	20	13	36	1.90
509610--509641	15	2.1	15	94	0	55	59	9	18	12	1.59
520317--520364	24	2.0	23	88	4	69	16	35	2	45	1.59
520329--520368	18	2.2	18	91	8	64	20	32	0	47	1.50
527509--527540	17	1.9	17	93	6	57	62	0	3	34	1.11
527626--527695	27	2.4	28	81	13	72	35	32	7	24	1.83
529865--529893	2	14.5	2	100	0	58	48	0	0	51	1.00
532407--532436	2	15.0	2	100	0	60	50	0	0	50	1.00
539660--539698	7	5.6	7	93	0	69	28	25	30	15	1.96
539687--539746	17	3.0	22	74	23	76	15	23	43	18	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
539699--539747	17	2.9	17	90	0	80	14	22	44	18	1.85
539743--539831	9	9.3	9	75	11	70	30	25	26	16	1.97
539749--539831	19	4.3	18	80	11	85	31	26	25	16	1.97
539749--539831	38	2.2	39	82	10	100	31	26	25	16	1.97
547015--547072	5	10.8	5	78	14	62	6	22	51	18	1.70
547001--547083	34	2.4	35	80	15	100	14	24	44	16	1.85
547025--547073	17	2.9	17	100	0	98	10	22	48	18	1.77
547008--547072	22	3.0	22	74	17	80	9	23	49	18	1.76
547069--547157	28	3.1	27	83	6	79	30	26	26	15	1.96
547075--547158	9	8.7	10	78	12	79	30	27	25	16	1.97
547075--547157	19	4.3	19	80	11	89	31	27	25	15	1.96
551311--551354	23	1.9	23	95	0	79	20	25	31	22	1.98
556686--556717	15	2.1	15	100	0	64	31	31	0	37	1.58
559355--559447	21	4.5	21	78	4	100	39	18	24	17	1.91
559355--559447	41	2.3	41	100	0	186	39	18	24	17	1.91
559433--559510	41	1.9	41	86	5	113	39	20	15	24	1.91
559478--559529	20	2.6	20	93	0	86	26	28	19	25	1.98
560081--560125	19	2.4	19	92	7	74	48	24	15	11	1.77
560121--560305	19	10.1	19	75	14	165	11	21	22	44	1.84
560121--560305	33	5.1	38	78	12	165	11	21	22	44	1.84
561790--561856	21	3.2	21	66	6	55	23	35	20	19	1.95
564219--564243	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564418--564471	24	2.2	24	90	0	81	38	20	16	24	1.92
565531--565588	20	2.9	20	94	0	98	37	22	22	17	1.93
565607--565724	33	3.4	35	83	16	133	13	21	17	47	1.82
565607--565741	19	7.6	19	84	13	182	13	22	18	45	1.84
565607--565724	52	2.3	52	100	0	236	13	21	17	47	1.82
567732--567798	19	3.5	19	83	4	89	37	23	23	14	1.93
567787--567844	14	3.9	14	75	16	62	50	25	15	8	1.73
567771--567849	32	2.4	33	93	2	133	48	24	17	10	1.78
567852--567980	19	7.3	19	74	16	91	13	18	24	44	1.85
567869--567926	14	3.9	14	79	16	71	8	15	25	50	1.73
567852--567942	32	2.8	33	94	3	166	10	17	23	48	1.79
567927--567980	20	2.8	19	86	5	72	18	22	24	35	1.96
568451--568495	18	2.5	18	85	0	63	11	15	46	26	1.79
569812--569849	20	1.9	20	88	0	58	50	21	15	13	1.78
570112--570155	22	2.0	22	95	0	79	18	15	45	20	1.85
570323--570436	20	5.7	20	77	10	90	25	16	24	33	1.96
570425--570517	20	4.5	21	78	4	100	17	24	18	39	1.91
570364--570498	41	3.3	41	84	4	148	20	20	21	37	1.94
570425--570517	41	2.3	41	100	0	186	17	24	18	39	1.91
576100--576167	32	2.2	31	84	7	86	32	26	7	33	1.84
577249--577315	31	2.2	31	94	0	116	22	28	13	35	1.92
581887--581970	2	42.0	2	100	0	168	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589611--589671	22	2.6	23	79	12	61	36	0	1	62	1.05
590869--590903	2	17.5	2	100	0	70	51	0	0	48	1.00
590908--591192	155	1.8	156	87	6	429	51	8	4	35	1.52
592673--592748	3	25.0	3	87	12	111	65	0	0	34	0.93
593075--593653	122	4.7	122	88	5	765	26	18	14	40	1.88
594572--594626	18	3.1	18	89	2	85	50	3	9	36	1.51
595000--595034	11	3.3	11	88	4	54	0	11	0	88	0.51
595000--595035	15	2.3	16	90	4	56	0	13	0	86	0.58
602209--602240	15	2.1	15	100	0	64	50	6	18	25	1.70
606030--606084	30	1.9	28	89	10	85	40	0	0	60	0.97

Tables:   1   2   3   4   5