genome.fa.s8240.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008240.1 Hibiscus syriacus cultivar Beakdansim tig00110888_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  893855

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 578 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618031--618084	2	26.5	2	84	3	72	50	1	1	46	1.23
618531--618555	2	12.5	2	100	0	50	52	0	0	48	1.00
618641--618692	25	2.1	24	85	3	68	44	1	3	50	1.31
618649--618721	25	2.8	26	82	13	73	38	2	6	52	1.43
618593--618753	13	11.8	13	70	19	91	42	4	4	47	1.44
618587--618740	81	1.9	81	85	5	213	42	3	4	49	1.41
618737--618783	18	2.6	18	80	12	60	46	4	8	40	1.54
618674--618791	13	7.9	15	70	19	70	44	4	6	44	1.50
624185--624249	34	1.9	34	93	3	114	30	9	18	41	1.82
624267--624887	36	18.4	36	64	20	132	39	13	19	28	1.89
624276--624365	34	2.6	35	85	3	110	43	16	21	18	1.88
624390--624447	30	1.9	30	83	13	75	36	12	17	34	1.87
624532--624873	37	10.0	37	63	22	156	39	14	18	28	1.89
624403--624785	102	3.8	101	86	1	471	39	13	18	28	1.89
624561--624932	167	2.2	166	85	1	492	39	13	16	29	1.88
624465--624984	269	1.9	269	93	0	896	38	13	18	29	1.89
624680--624850	65	2.6	65	85	2	236	39	11	19	29	1.87
624727--624932	102	2.0	103	93	0	351	38	13	16	31	1.88
624737--624968	102	2.3	102	86	1	304	39	13	18	28	1.89
625052--625170	36	3.3	35	73	11	107	43	12	17	26	1.85
625012--625154	72	1.9	75	88	5	220	39	12	19	27	1.88
625016--625173	72	2.1	74	84	4	203	41	12	18	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626290--626637	181	1.9	182	91	1	572	30	20	19	29	1.97
632314--632352	17	2.6	14	84	15	51	79	5	0	15	0.90
632384--632424	2	20.5	2	100	0	82	51	0	0	48	1.00
633561--633598	20	2.0	20	89	5	60	26	13	2	57	1.49
633859--633935	23	3.6	21	72	10	75	23	33	18	24	1.96
633859--633908	21	2.3	21	86	6	64	20	38	18	24	1.93
645959--645992	14	2.4	14	90	5	50	70	5	2	20	1.21
654625--654686	25	2.5	25	78	0	70	29	1	9	59	1.38
656715--656790	31	2.5	31	86	4	100	43	6	19	30	1.76
656758--657057	66	4.6	66	80	5	344	43	8	15	32	1.77
656758--657057	65	4.6	65	80	8	333	43	8	15	32	1.77
656758--657057	131	2.3	132	82	5	394	43	8	15	32	1.77
656758--657058	67	4.6	68	78	12	312	43	8	15	32	1.77
662592--662624	14	2.3	15	94	5	59	90	9	0	0	0.44
662592--662626	11	3.0	12	83	8	54	91	8	0	0	0.42
668492--668544	20	2.7	20	96	0	97	28	32	15	24	1.95
678296--678337	17	2.4	18	80	8	50	54	2	0	42	1.13
678389--678474	42	2.0	42	97	0	163	54	9	8	27	1.60
683706--683743	19	2.0	19	89	0	58	10	21	21	47	1.80
692477--692555	18	4.6	17	76	20	76	58	0	1	40	1.06
692475--692526	19	3.1	17	79	17	63	55	0	0	44	0.99
692516--692544	15	1.9	15	100	0	58	68	0	3	27	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692881--692924	20	2.2	20	100	0	88	43	22	18	15	1.88
693037--693087	22	2.3	22	96	0	93	21	43	13	21	1.87
693337--693379	19	2.2	20	88	12	63	46	25	16	11	1.80
696325--696394	19	3.6	20	80	5	72	24	14	22	38	1.91
696386--696452	21	3.2	21	93	0	116	38	16	25	19	1.92
698336--698378	20	2.2	20	91	0	68	11	6	16	65	1.46
701094--701178	42	2.0	42	100	0	170	44	20	14	21	1.86
706333--707363	257	4.0	257	98	0	2001	33	17	19	29	1.94
710360--710399	21	1.9	21	84	0	53	20	10	2	67	1.31
711013--711072	23	2.6	23	83	0	75	41	11	15	31	1.82
710879--711366	158	3.1	158	91	0	751	43	12	11	32	1.78
711171--711230	23	2.6	23	83	0	75	41	10	16	31	1.81
711435--711610	72	2.4	74	90	1	275	37	17	13	31	1.89
711685--711728	21	2.3	19	82	17	63	43	9	9	38	1.68
711688--712162	112	4.3	112	82	9	586	42	12	12	33	1.80
711935--712115	101	1.8	98	90	3	290	44	13	12	29	1.80
713144--713181	19	2.0	19	100	0	76	31	0	42	26	1.56
716686--716715	15	2.1	14	93	6	51	23	6	6	63	1.43
716686--716742	28	2.1	28	83	9	73	26	8	8	56	1.59
722513--722566	28	1.9	28	84	0	72	59	5	1	33	1.31
724352--724391	19	2.1	19	85	0	53	47	0	2	50	1.14
726977--727019	16	2.7	15	85	7	50	51	2	2	44	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
728058--728587	265	2.0	265	99	0	1042	32	17	15	35	1.91
729915--729953	17	2.3	18	86	8	55	66	7	2	23	1.30
730021--730076	21	2.5	22	77	5	60	64	8	7	19	1.45
730102--730128	14	1.9	14	100	0	54	66	0	7	25	1.17
730102--730141	14	2.9	14	88	0	53	62	0	10	27	1.27
730134--730177	20	2.1	21	87	8	63	61	9	9	20	1.53
732015--732368	136	2.6	136	85	2	453	26	22	16	33	1.96
733117--733316	56	3.6	56	77	11	198	37	21	10	31	1.86
733350--733463	42	2.7	41	77	6	122	30	22	19	27	1.98
733627--733740	42	2.7	41	78	6	122	31	22	18	27	1.97
733228--733889	277	2.4	275	89	1	1024	35	21	14	28	1.93
735205--735283	28	2.8	28	96	1	140	22	3	35	37	1.73
735936--736032	11	8.4	11	73	15	61	3	16	1	79	0.92
735922--736026	28	3.7	27	78	14	104	2	17	0	79	0.91
735924--736041	57	2.1	57	83	12	147	4	17	0	77	0.98
735922--736032	27	4.1	26	75	17	100	2	17	0	79	0.90
735924--736044	19	6.5	18	75	16	97	4	17	0	77	0.97
737311--737352	21	2.0	21	86	9	59	35	19	16	28	1.93
739845--739871	14	1.9	14	100	0	54	66	0	7	25	1.17
739845--739884	14	2.9	14	88	0	53	62	0	10	27	1.27
739877--739920	20	2.1	21	87	8	63	61	9	9	20	1.53
740052--740086	18	1.9	18	94	0	61	71	5	0	22	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
741561--741602	19	2.3	18	80	8	50	52	0	2	45	1.13
743927--743981	20	2.8	19	86	5	74	43	27	16	12	1.84
743949--744158	20	10.5	20	83	5	228	36	25	18	20	1.95
744839--744885	24	2.0	24	87	8	69	25	14	21	38	1.92
745060--745084	12	2.1	12	100	0	50	72	0	28	0	0.86
747364--747675	33	9.2	33	73	17	257	45	18	22	13	1.84
747405--747681	52	5.3	52	97	1	513	45	17	23	14	1.84
747430--747663	19	13.8	15	76	19	73	45	17	23	13	1.84
747405--747681	103	2.7	103	97	1	509	45	17	23	14	1.84
747690--747768	19	4.4	19	80	16	105	13	22	17	45	1.84
747875--747911	14	2.6	14	91	0	65	45	21	0	32	1.52
749888--749944	14	3.7	14	77	20	60	45	22	21	10	1.82
749869--749961	33	2.8	33	95	0	168	47	21	20	10	1.80
749832--749966	19	7.6	19	76	16	128	45	23	19	11	1.82
749962--750090	19	7.3	19	75	17	125	8	17	28	45	1.77
749962--750053	33	2.8	33	93	3	150	7	18	28	45	1.76
750138--750513	93	4.1	93	99	0	736	46	19	12	22	1.83
752215--752303	14	5.7	14	73	21	79	42	23	24	8	1.83
752207--752320	33	3.5	33	95	2	212	45	21	23	9	1.81
752337--752393	14	3.7	14	75	20	60	8	24	22	43	1.81
752321--752401	33	2.5	33	95	0	144	8	22	22	46	1.78
752378--752453	21	3.7	21	83	3	109	11	25	17	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
752377--752454	41	1.9	41	97	0	147	12	25	16	44	1.83
752533--752602	33	2.2	32	89	2	104	47	18	22	11	1.81
752783--752837	22	2.5	22	81	0	74	20	16	40	23	1.91
752984--753177	60	3.2	60	85	0	262	19	19	25	36	1.95
752984--753177	20	9.6	20	82	5	221	19	19	25	36	1.95
753164--753246	21	4.0	21	73	6	78	25	16	24	33	1.96
753144--753242	42	2.4	43	77	11	100	21	18	23	37	1.94
753619--753695	9	8.4	9	68	17	52	32	3	2	61	1.28
757231--757274	22	2.0	22	86	0	61	68	15	13	2	1.31
760122--760159	16	2.3	16	95	4	67	26	7	28	36	1.84

Tables:   1   2   3   4   5