genome.fa.s8251.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008251.1 Hibiscus syriacus cultivar Beakdansim tig00110903_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  521115

Tables:   1   2   3   

This is table  2  of  3  ( 253 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208564--208608	9	4.7	10	81	10	58	62	0	2	35	1.08
208755--209002	134	1.9	134	79	6	288	27	16	28	28	1.97
209301--209433	66	2.0	65	81	4	151	45	12	14	28	1.80
215408--215435	4	7.0	4	100	0	56	25	0	0	75	0.81
215724--215760	2	18.5	2	100	0	74	51	0	0	48	1.00
216432--216496	34	1.9	34	93	0	112	13	26	41	18	1.88
216638--216686	3	15.7	3	91	8	80	65	0	0	34	0.93
219270--219314	22	2.0	22	82	0	54	35	22	15	26	1.94
219337--219390	20	2.7	20	88	0	72	33	27	16	22	1.95
219768--219803	18	2.0	18	94	0	63	25	33	8	33	1.86
222090--222173	32	2.7	30	75	8	87	40	5	25	28	1.79
222694--222725	12	2.7	12	90	0	55	62	0	12	25	1.30
225879--225955	8	9.0	9	78	16	51	50	0	1	48	1.09
225879--225927	2	25.0	2	84	12	66	48	0	2	48	1.12
226845--226923	23	3.4	23	83	10	99	56	3	2	36	1.31
226840--226931	23	4.1	22	82	10	73	57	3	2	36	1.27
226918--226971	22	2.5	22	84	0	72	48	0	1	50	1.11
229284--229395	48	2.3	48	93	0	188	48	5	35	10	1.61
229294--229371	24	3.2	24	67	13	70	47	2	37	12	1.56
231998--232033	18	2.0	18	88	0	54	55	0	44	0	0.99
237273--237320	20	2.4	20	82	0	60	10	29	58	2	1.43
237290--237321	17	1.9	16	93	6	55	9	31	59	0	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238922--238949	13	2.2	13	100	0	56	7	14	17	60	1.55
241189--241254	15	4.4	15	70	10	55	45	3	0	51	1.16
241193--241257	32	2.0	32	93	0	112	47	6	0	46	1.27
241210--241273	32	2.0	32	84	3	85	50	6	0	43	1.27
241263--241338	3	26.0	3	77	15	70	63	3	1	31	1.21
250399--250427	2	14.5	2	100	0	58	48	0	0	51	1.00
255913--255971	21	2.8	21	84	2	73	28	13	27	30	1.94
261950--262337	182	2.1	182	88	2	568	42	14	16	26	1.86
262965--263034	18	3.8	18	70	9	52	42	2	17	37	1.64
264656--264756	33	3.0	32	91	7	157	26	0	48	24	1.51
266742--267903	200	5.8	201	83	2	1410	37	14	16	31	1.89
266742--267909	402	2.9	397	84	3	1452	37	14	16	31	1.89
269391--269456	9	7.3	9	84	0	78	37	3	30	28	1.72
269391--269456	6	11.0	6	85	0	78	37	3	30	28	1.72
270940--272109	200	5.8	199	84	3	1359	38	13	15	31	1.87
270940--272108	402	2.9	400	86	3	1575	39	13	15	31	1.87
270940--272109	602	1.9	602	85	3	1622	38	13	15	31	1.87
276230--276946	199	3.6	197	81	7	774	39	13	15	30	1.86
276947--277109	87	1.9	87	97	0	308	33	14	10	41	1.80
277031--277075	23	2.0	23	90	0	72	40	20	6	33	1.78
288992--289056	23	2.8	22	73	13	60	78	1	3	16	0.96
290798--290830	3	10.7	3	93	6	57	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291021--291369	131	2.6	131	81	4	373	28	18	27	25	1.98
291380--291595	66	3.3	65	84	5	267	39	14	23	22	1.91
310759--310814	22	2.7	19	81	15	58	32	21	16	30	1.95
312769--312801	16	2.0	17	88	5	50	15	0	27	57	1.38
316755--316797	22	2.0	22	81	9	52	37	16	13	32	1.88
324198--324239	3	13.7	3	95	5	75	66	0	0	33	0.92
329798--329918	27	4.6	26	73	12	97	35	19	0	44	1.56
329795--329919	26	4.8	25	75	15	94	36	20	0	43	1.57
329795--329912	53	2.3	51	85	2	146	38	18	0	42	1.57
331382--331432	25	2.0	25	96	0	93	25	11	21	41	1.87
331681--331713	14	2.4	14	90	5	50	45	0	0	54	0.99
332956--333097	70	2.0	71	86	5	196	39	2	5	52	1.37
333076--333104	2	14.5	2	100	0	58	48	0	0	51	1.00
332956--333097	73	2.0	73	86	5	200	39	2	5	52	1.37
334592--334646	17	3.4	17	72	10	60	29	7	3	60	1.41
336975--337188	108	2.0	108	100	0	428	35	8	18	36	1.82
353647--353682	16	2.2	17	95	5	65	44	19	0	36	1.51
358244--358292	21	2.3	20	79	6	53	16	10	36	36	1.82
358897--358940	22	1.9	23	86	9	63	45	2	2	50	1.27
362951--362999	24	2.0	24	100	0	98	42	12	12	32	1.79
364665--364753	29	3.0	29	71	11	81	35	20	4	39	1.73
368263--368595	166	2.0	167	98	1	643	24	19	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370461--370509	24	2.0	24	96	0	89	44	12	10	32	1.75
372187--372275	29	3.0	29	75	8	81	34	21	4	39	1.74
381912--381968	2	28.5	2	96	0	105	47	0	1	50	1.11
382135--382184	10	5.1	10	75	22	52	32	0	0	68	0.90
382145--382186	16	2.6	16	79	20	52	28	0	0	71	0.86
394177--394210	17	2.0	17	88	0	50	14	2	29	52	1.56
394889--394925	19	1.9	19	94	0	65	21	43	21	13	1.87
396294--397157	84	10.4	83	76	5	712	31	24	19	25	1.98
396302--396943	165	3.9	165	79	5	679	31	24	18	25	1.98
396294--397160	249	3.5	247	83	3	942	31	24	19	25	1.98
397524--397579	10	5.6	10	74	16	53	30	0	0	69	0.89
397523--397580	3	20.7	3	80	19	56	29	0	0	70	0.87
397520--397583	16	3.9	16	78	17	62	28	0	0	71	0.86
398084--398145	4	15.0	4	77	15	56	29	1	0	69	0.98
398087--398146	14	4.8	13	84	10	63	30	1	0	68	0.99
398927--399038	29	3.8	29	90	2	161	40	8	0	50	1.34
398936--399050	59	2.0	58	84	3	151	39	7	0	53	1.30
410680--411669	149	6.9	146	84	8	1026	20	34	21	23	1.97
410843--411669	137	5.9	138	85	5	921	20	34	21	23	1.97
410687--411669	286	3.5	280	82	7	1110	20	34	21	23	1.96
414640--414996	30	12.0	29	72	11	172	50	1	7	40	1.38
414761--414875	31	3.9	31	81	6	107	53	0	6	38	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414923--414996	29	2.5	29	91	2	121	54	0	5	40	1.24
432314--432353	21	1.9	21	85	10	55	25	37	25	12	1.91
440200--440265	21	3.1	21	68	23	57	27	9	19	43	1.81
440290--440339	21	2.4	21	89	0	73	26	14	30	30	1.94
441463--444100	881	3.0	881	96	0	4857	37	5	23	33	1.79
444623--444679	22	2.7	21	82	12	64	35	12	24	28	1.91
444718--444751	13	2.6	13	100	0	68	32	0	14	52	1.42
445420--445459	21	1.9	21	94	0	71	17	17	30	35	1.93
446992--447037	13	3.5	13	80	14	58	69	8	0	21	1.15
447872--447896	11	2.3	11	100	0	50	0	48	0	52	1.00
448215--448247	13	2.5	13	86	13	50	72	3	21	3	1.11
448713--448966	90	2.8	90	89	3	393	24	21	16	37	1.93
449838--449942	54	1.9	54	84	3	140	40	17	9	32	1.81
450090--450203	42	2.8	40	81	6	129	31	21	21	26	1.98
450241--450410	55	3.1	53	75	14	175	39	18	10	32	1.84
452366--452479	8	14.0	8	77	14	85	3	15	0	80	0.84
452367--452480	18	6.3	18	77	8	108	3	14	0	81	0.82
452367--452480	46	2.5	46	85	5	144	3	14	0	81	0.82
457215--457258	6	7.5	6	82	12	56	81	0	4	13	0.83
458678--458730	19	2.7	20	91	2	90	26	20	35	16	1.94
458771--458817	20	2.3	20	96	0	85	27	17	36	19	1.93
459885--460337	223	2.0	226	97	2	867	28	16	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460521--460549	15	1.9	15	100	0	58	27	27	3	41	1.72
461185--461217	16	2.0	17	88	5	50	51	12	9	27	1.69
461494--461560	23	2.9	23	93	0	116	32	22	20	23	1.98
461493--461568	23	3.3	23	88	0	107	30	21	25	23	1.99
471227--471282	25	2.2	25	100	0	112	32	21	16	30	1.95
473022--473047	11	2.4	11	100	0	52	73	0	0	26	0.84
474666--475015	91	3.9	90	88	1	513	24	21	17	36	1.95
474670--475013	181	1.9	182	91	1	548	24	21	17	36	1.94
475836--476048	58	3.8	57	73	12	165	40	18	9	31	1.82
475836--476048	115	1.9	110	83	8	277	40	18	9	31	1.82

Tables:   1   2   3