genome.fa.s8269.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008269.1 Hibiscus syriacus cultivar Beakdansim tig00110926_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  799769

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 529 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1332--1375	13	3.3	13	81	6	52	50	0	6	43	1.29
6506--6572	30	2.2	31	81	2	73	32	25	20	20	1.97
6550--6658	31	3.5	31	75	7	112	36	20	14	28	1.92
6532--6652	63	1.9	63	83	5	156	33	22	15	28	1.95
8888--8927	18	2.2	18	86	4	53	62	2	0	35	1.09
11422--11489	2	34.0	2	100	0	136	50	0	0	50	1.00
12881--12929	20	2.5	20	96	3	91	30	16	22	30	1.96
16782--16819	2	19.0	2	100	0	76	50	0	0	50	1.00
20922--21132	65	3.3	64	79	8	214	30	24	18	26	1.98
28493--28536	21	2.1	21	82	0	52	9	43	15	31	1.79
29119--29143	2	12.5	2	100	0	50	48	0	0	52	1.00
29682--29787	45	2.3	45	87	4	142	30	20	19	29	1.97
30992--31160	6	24.3	7	68	22	58	53	2	5	37	1.39
31103--31192	36	2.5	36	85	8	121	50	3	6	40	1.45
31028--31168	2	74.0	2	71	17	77	55	2	4	38	1.31
31154--31295	22	6.3	22	67	20	69	47	6	9	37	1.61
31210--31312	49	2.1	50	83	10	131	47	7	7	36	1.61
31294--31344	19	2.7	19	87	6	68	37	5	11	45	1.65
31466--31545	2	41.5	2	76	16	80	43	2	3	50	1.33
33534--33748	107	2.0	108	96	1	396	46	7	7	38	1.60
34123--34175	16	3.3	16	79	7	63	71	0	0	28	0.86
34356--34400	17	2.6	17	86	10	56	64	0	15	20	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36437--36678	85	2.8	85	94	0	412	27	18	18	36	1.94
36745--37252	86	5.9	86	88	0	719	21	22	26	28	1.99
38465--38747	95	3.0	95	90	1	433	30	19	16	33	1.94
41305--41336	14	2.2	15	94	5	57	78	0	9	12	0.97
43172--43223	24	2.2	22	83	12	68	55	1	3	38	1.29
43186--43223	12	3.2	12	88	3	60	55	0	5	39	1.23
43304--43427	34	3.5	34	72	16	99	50	4	8	37	1.51
43274--43362	40	2.2	41	82	11	103	51	5	6	35	1.52
43238--43398	8	20.2	8	71	16	68	52	4	5	36	1.47
43337--43428	12	7.4	12	67	24	57	47	4	8	39	1.54
43436--43492	29	2.0	29	82	6	71	29	5	15	49	1.67
43643--43694	2	26.0	2	100	0	104	50	0	0	50	1.00
44162--44199	2	19.0	2	100	0	76	50	0	0	50	1.00
44352--44395	13	3.3	13	81	6	52	50	0	6	43	1.29
55210--55267	22	2.7	21	84	10	73	24	20	25	29	1.99
60716--60810	32	2.9	32	87	1	136	29	11	20	38	1.87
60721--60824	32	3.2	32	86	2	102	30	12	19	37	1.89
62024--62135	37	3.1	37	92	2	199	26	23	13	36	1.92
62022--62130	36	3.0	36	93	1	191	26	22	13	36	1.92
62150--62266	36	3.2	36	82	9	148	26	19	12	41	1.88
62046--62234	102	1.9	102	85	6	267	28	20	11	39	1.88
62348--62671	84	3.8	84	86	0	423	31	25	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63188--63295	37	2.9	37	91	0	180	40	12	13	32	1.83
66488--66563	20	3.8	20	75	16	75	23	17	31	27	1.97
68544--68668	43	2.9	43	87	3	180	31	16	25	26	1.97
68590--68770	43	4.2	42	75	9	134	29	19	20	29	1.98
69109--69185	21	3.7	21	87	0	109	6	38	15	38	1.73
69109--69238	21	6.2	21	76	8	86	5	37	16	40	1.72
79571--79750	41	4.3	41	82	4	193	31	16	17	35	1.92
79571--79930	42	8.7	40	73	17	175	29	19	17	34	1.94
79613--79916	82	3.7	83	80	10	286	27	19	17	35	1.94
79613--79916	166	1.8	165	80	10	361	27	19	17	35	1.94
80957--81035	23	3.5	23	80	13	83	30	18	22	27	1.98
84734--84780	20	2.3	21	79	17	55	40	8	0	51	1.33
86664--86711	18	2.4	20	76	20	55	22	18	29	29	1.98
86674--86708	18	1.9	18	94	0	61	20	17	37	25	1.94
88548--88606	20	3.0	21	92	5	79	42	22	0	35	1.54
88559--88606	20	2.4	20	100	0	96	43	20	0	35	1.52
91337--91780	122	3.5	122	88	4	647	37	5	6	50	1.52
95960--96033	4	18.2	4	73	15	55	25	1	1	71	1.02
95953--96022	35	2.1	32	86	7	95	25	0	1	72	0.92
96023--96066	15	2.9	15	93	0	70	38	4	0	56	1.20
96023--96070	17	2.9	17	87	6	64	39	4	0	56	1.19
96100--96138	15	2.8	13	82	14	51	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96958--97059	9	11.3	9	67	26	56	65	1	1	30	1.14
96991--97064	22	3.7	20	73	15	64	67	1	0	31	0.99
96992--97056	28	2.3	29	79	12	73	69	1	0	29	0.98
97001--97063	22	3.0	21	84	9	76	69	1	0	28	0.97
97540--97600	30	2.0	30	93	0	104	16	24	14	44	1.85
98257--98289	15	2.3	15	89	5	50	54	3	0	42	1.15
109390--109425	17	2.1	18	89	5	56	72	2	5	19	1.17
120215--120245	16	1.9	16	93	0	53	29	0	3	67	1.06
121148--121219	25	2.9	24	74	12	65	65	11	2	20	1.37
123574--123607	9	3.9	9	84	7	52	61	2	0	35	1.11
123570--123608	17	2.4	17	95	4	71	61	5	0	33	1.18
125587--125633	19	2.3	21	71	10	53	59	4	2	34	1.29
127650--127734	20	4.6	20	72	23	78	28	24	17	29	1.97
127722--127819	21	4.7	21	81	5	117	44	20	16	18	1.86
127806--127859	20	2.7	20	82	0	72	33	25	18	22	1.97
128598--128651	24	2.2	24	90	0	81	22	16	20	40	1.91
131137--131191	19	2.8	19	83	2	65	38	21	21	18	1.94
131164--131255	33	2.8	33	96	0	166	45	18	23	11	1.83
131144--131261	19	6.7	19	71	19	94	43	19	24	12	1.86
131250--131291	19	2.2	19	86	0	57	16	19	23	40	1.91
131256--131356	19	5.3	18	91	4	130	13	18	22	44	1.85
131286--131364	38	2.1	38	88	4	115	15	20	18	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131267--131356	19	4.7	19	91	6	139	12	20	22	45	1.83
131464--131498	14	2.5	14	90	0	61	45	20	0	34	1.51
132849--132915	21	3.2	21	68	4	55	19	20	35	23	1.95
132849--132971	42	2.9	41	79	7	113	22	18	36	21	1.95
133360--133602	94	2.6	94	92	2	409	49	18	11	20	1.78
133580--133614	12	2.9	12	100	0	70	74	17	8	0	1.06
133487--133676	102	1.8	105	88	5	298	50	16	11	21	1.77
135364--135496	20	7.1	19	76	12	132	46	18	23	12	1.82
135492--135609	19	6.7	19	71	19	94	11	20	22	45	1.82
135508--135603	33	2.9	33	93	1	156	11	22	22	42	1.86
136134--136245	20	5.6	19	82	8	107	20	21	19	38	1.94
136132--136245	41	2.8	40	85	2	147	21	21	19	37	1.94
136126--136368	41	6.0	41	71	10	135	26	19	19	34	1.96
136126--136260	61	2.2	60	77	6	164	25	19	18	36	1.94
136242--136297	20	2.7	21	75	5	60	41	16	23	19	1.90
136314--136365	20	2.5	20	81	3	59	21	23	15	40	1.91
136355--136407	21	2.5	23	77	17	62	37	16	24	20	1.93
136195--136425	120	1.9	119	82	9	283	29	18	21	30	1.97
141614--141647	13	2.6	13	95	0	59	35	29	0	35	1.58
155958--155982	11	2.3	11	100	0	50	40	8	8	44	1.63
162360--162392	16	2.1	16	100	0	66	57	6	12	24	1.57
165294--165480	31	6.0	31	87	2	268	40	22	16	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166903--167081	2	91.5	2	83	6	179	42	2	3	51	1.33
177420--177478	8	7.6	8	84	7	86	84	1	13	0	0.69
177421--177478	15	3.8	15	93	2	98	84	1	13	0	0.70
177422--177478	23	2.5	24	83	13	66	84	1	14	0	0.71
180054--180102	2	24.5	2	100	0	98	48	0	0	51	1.00
181213--181242	9	3.3	9	95	0	51	20	23	3	53	1.60
184800--184924	31	4.0	32	80	12	136	39	20	17	23	1.92
192692--192846	81	1.9	81	93	0	265	29	13	12	44	1.81
195093--195139	17	2.7	17	87	9	60	51	4	0	44	1.21
195111--195211	18	6.6	15	70	17	57	45	5	4	43	1.50

Tables:   1   2   3   4   5