genome.fa.s8269.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008269.1 Hibiscus syriacus cultivar Beakdansim tig00110926_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  799769

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 529 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
737925--737961	18	2.1	18	89	0	56	51	10	5	32	1.60
738210--738260	25	2.0	25	92	0	84	39	19	7	33	1.81
738529--738580	23	2.3	22	90	6	77	44	19	1	34	1.62
738539--738601	23	2.7	23	90	0	90	38	19	6	36	1.77
738958--739009	23	2.3	22	90	6	77	44	19	1	34	1.62
738968--739030	23	2.7	23	90	0	90	38	19	6	36	1.77
741606--741948	183	1.9	184	93	0	589	33	16	14	35	1.89
743417--743503	3	29.0	3	77	0	84	24	34	5	35	1.79
743417--743518	18	5.7	18	79	0	87	22	34	6	36	1.81
743425--743515	42	2.2	42	91	0	146	21	35	7	35	1.83
744978--746739	199	8.9	199	97	0	3331	31	16	16	36	1.91
744978--746739	396	4.4	398	97	1	3340	31	16	16	36	1.91
746267--746304	15	2.5	15	80	16	51	18	10	23	47	1.79
746858--746906	19	2.6	19	93	0	80	57	10	2	30	1.43
748698--748763	33	2.0	33	87	0	96	24	45	1	28	1.62
748813--748861	21	2.3	21	75	0	53	18	30	14	36	1.90
751082--751128	20	2.4	19	80	19	69	21	17	10	51	1.75
756592--756654	23	2.8	23	92	2	101	34	22	22	20	1.96
767037--767083	24	2.0	24	87	4	69	44	23	0	31	1.54
767133--767183	18	2.8	19	85	8	63	27	35	17	19	1.94
770094--770140	20	2.4	19	89	10	76	55	8	17	19	1.67
769882--770354	181	2.6	181	89	1	696	42	13	17	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
770263--770321	20	3.0	19	80	9	73	54	10	15	20	1.70
770284--770326	20	2.3	19	88	11	63	51	11	16	20	1.75
772548--772600	21	2.5	21	75	0	61	39	13	30	16	1.87
772646--772711	33	2.0	33	93	0	114	30	0	46	22	1.52
774502--774550	19	2.6	19	93	0	80	30	2	10	57	1.43
774659--775818	199	5.8	199	97	0	2178	36	15	16	31	1.90
774659--775818	397	2.9	398	97	0	2178	36	15	16	31	1.90
777280--777371	6	15.3	6	76	0	58	36	7	33	21	1.82
777283--777359	36	2.1	36	87	0	109	35	9	33	22	1.85
777331--777375	3	15.0	3	85	0	63	37	2	33	26	1.69
777283--777371	12	7.4	12	81	0	79	35	7	33	22	1.83
777280--777371	18	5.1	18	74	0	67	36	7	33	21	1.82
778491--778533	21	2.1	21	86	4	61	30	11	6	51	1.65
778841--779326	183	2.7	182	95	1	855	34	14	16	33	1.90
781796--781860	25	2.6	25	80	0	85	35	9	13	41	1.77
782138--782183	22	2.1	22	83	0	56	39	8	10	41	1.71
782201--782273	23	3.2	23	88	0	101	34	4	21	39	1.73
782699--782735	18	2.1	18	89	0	56	32	5	10	51	1.60
782991--783077	39	2.2	39	91	0	147	48	19	13	18	1.81
783488--783560	23	3.2	23	88	0	101	34	4	21	39	1.73
783704--783769	29	2.2	29	82	12	73	51	4	0	43	1.22
784029--784071	22	1.9	23	85	4	61	44	9	9	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
791766--791816	13	3.9	13	86	0	75	31	1	17	49	1.58
793989--794169	43	4.2	43	83	2	220	32	22	22	22	1.98
794004--794167	85	1.9	87	88	2	251	32	21	21	23	1.98
797498--797815	40	7.9	41	74	11	248	37	17	19	25	1.94
797443--797878	41	10.8	41	75	10	344	35	16	19	27	1.94

Tables:   1   2   3   4   5

The End!