genome.fa.s8269.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008269.1 Hibiscus syriacus cultivar Beakdansim tig00110926_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  799769

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 529 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351104--351167	30	2.1	30	85	0	83	18	18	28	34	1.95
353247--353361	39	2.8	43	77	10	157	33	6	19	40	1.78
356629--356674	21	2.2	21	96	0	83	19	4	23	52	1.64
357391--357464	20	3.7	20	100	0	148	25	24	9	40	1.85
358426--358466	21	2.0	21	100	0	82	34	17	0	48	1.47
365881--365916	19	1.9	18	88	5	54	61	5	25	8	1.46
368924--369086	67	2.4	67	86	0	227	41	17	18	22	1.91
368964--369083	35	3.5	36	71	20	103	40	19	18	22	1.92
370665--370757	21	4.5	21	75	4	91	39	17	24	18	1.91
370665--370757	41	2.3	41	98	0	177	39	17	24	18	1.91
370746--370860	20	5.7	20	82	2	113	33	25	17	23	1.96
371048--371091	22	2.0	22	95	0	79	20	45	15	18	1.85
371335--371378	20	2.2	20	87	0	61	11	18	20	50	1.77
372698--372742	18	2.5	18	88	0	72	26	44	15	13	1.83
373224--373290	20	3.4	20	81	2	73	38	23	22	14	1.92
373279--373336	14	3.9	14	79	16	71	48	25	17	8	1.75
373263--373353	32	2.8	33	94	3	166	47	23	18	10	1.80
373224--373358	19	7.6	19	71	19	85	42	23	20	12	1.86
373370--373427	14	3.9	14	79	16	71	8	17	25	48	1.75
373365--373435	32	2.2	33	97	2	135	8	19	23	47	1.77
373428--373481	20	2.8	19	86	5	63	16	24	24	35	1.95
373416--373481	19	3.4	19	79	4	78	15	22	24	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375347--375382	14	2.6	14	90	0	54	30	0	22	47	1.52
375499--375602	18	5.8	19	89	10	159	46	17	22	14	1.84
375499--375602	55	1.9	52	88	9	156	46	17	22	14	1.84
375611--375659	20	2.5	20	96	0	89	18	22	24	34	1.96
376716--376774	24	2.5	24	82	0	73	28	16	18	35	1.93
376949--376973	12	2.1	12	100	0	50	72	0	28	0	0.86
379265--379391	33	3.8	33	85	4	184	42	18	22	16	1.89
379270--379398	66	2.0	66	95	0	231	42	17	22	17	1.89
379408--379466	19	3.4	19	68	22	65	13	23	18	44	1.86
379404--379466	33	1.9	33	100	0	126	12	25	19	42	1.86
379573--379609	14	2.6	14	91	0	65	45	24	0	29	1.53
380970--381029	21	2.9	20	70	7	57	20	18	38	23	1.93
380966--381035	21	3.4	21	67	7	54	20	18	38	22	1.93
381008--381091	42	2.0	42	85	0	114	22	16	39	21	1.92
383092--383243	19	8.1	19	82	11	161	42	21	22	13	1.87
383092--383243	39	4.1	38	78	11	161	42	21	22	13	1.87
383239--383306	20	3.5	19	82	6	82	11	16	25	47	1.80
383825--383938	20	5.7	20	83	6	113	24	18	25	31	1.97
383825--383941	61	1.9	61	85	0	162	23	17	24	33	1.97
383825--383959	61	2.2	61	82	2	155	22	20	24	32	1.98
383922--383978	21	2.7	21	86	5	71	19	24	19	36	1.94
386126--386162	17	2.2	17	100	0	74	32	29	16	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396119--396297	39	4.6	39	91	0	277	29	20	17	33	1.95
398799--398939	21	6.8	21	77	11	123	37	21	20	20	1.94
398762--398938	42	4.3	40	74	12	137	37	22	20	19	1.94
398760--399160	20	19.8	20	72	11	113	38	23	18	19	1.93
398950--399157	41	5.1	41	89	1	303	38	24	17	19	1.92
398961--399157	40	4.9	41	91	1	299	39	23	17	19	1.92
399717--399794	21	3.8	20	78	11	88	50	17	20	11	1.77
399752--399788	19	1.9	19	100	0	74	48	18	21	10	1.78
399717--399794	40	1.9	41	86	2	113	50	17	20	11	1.77
399822--399911	19	4.7	19	81	2	117	15	21	16	46	1.84
401601--401911	94	3.3	94	96	0	552	21	13	18	46	1.83
402373--402469	21	4.6	21	75	3	88	22	36	18	22	1.95
403172--403205	17	2.0	17	100	0	68	11	17	23	47	1.81
403852--403887	14	2.6	14	90	0	54	30	0	22	47	1.52
404134--404303	20	8.4	20	84	1	214	20	18	24	35	1.95
404115--404303	40	4.7	40	88	1	252	20	17	24	37	1.94
404115--404303	80	2.3	81	88	1	281	20	17	24	37	1.94
404396--404447	20	2.6	20	75	6	61	15	21	32	30	1.94
408802--408929	63	2.1	61	84	8	161	44	8	5	41	1.58
410349--410412	30	2.2	30	83	5	78	34	15	6	43	1.72
416798--416848	18	2.8	18	84	0	66	23	17	31	27	1.97
423586--423658	22	3.3	20	70	27	51	58	6	1	32	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423571--423661	24	3.9	25	72	20	79	59	5	1	34	1.28
425302--425348	13	3.5	13	77	13	51	55	2	2	40	1.24
426819--426874	3	18.7	3	92	0	94	62	0	3	33	1.12
427126--428380	113	10.8	113	81	10	1318	29	20	12	37	1.89
427325--427877	65	8.0	65	75	12	410	30	20	11	37	1.88
427486--427530	23	1.9	23	82	13	56	15	26	6	51	1.68
427126--428380	355	3.6	356	90	4	1797	29	20	12	37	1.89
427841--427885	23	1.9	23	82	13	56	15	26	6	51	1.68
427809--428387	228	2.6	225	91	3	887	28	20	13	37	1.91
429180--429759	83	7.0	83	97	0	1063	35	22	14	28	1.93
430527--430573	16	2.7	17	83	12	60	55	8	4	31	1.49
430902--430941	6	6.7	6	83	11	55	0	15	0	85	0.61
430903--430946	11	3.9	11	91	5	70	0	13	0	86	0.57
441496--441530	17	2.1	17	88	0	52	60	0	5	34	1.21
442746--442802	28	2.0	29	83	10	73	22	24	14	38	1.91
443429--443469	20	2.0	20	86	9	57	39	0	4	56	1.21
443464--443509	3	15.7	3	90	4	76	63	0	2	34	1.07
445853--445882	15	2.0	15	93	0	51	43	13	6	36	1.70
448977--449019	22	1.9	23	90	4	70	48	2	0	48	1.14
449068--449169	30	3.3	33	78	9	101	50	4	2	41	1.39
449295--449356	23	2.8	22	77	13	65	54	0	0	45	0.99
449402--449434	5	6.4	5	93	6	57	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
449428--449461	12	2.9	12	86	4	52	58	0	0	41	0.98
449428--449482	23	2.3	24	84	6	67	50	0	1	47	1.11
449695--449728	14	2.4	14	90	0	50	38	8	20	32	1.84
449897--449941	23	2.0	23	90	0	72	24	11	24	40	1.87
450278--450343	2	33.0	2	100	0	132	50	0	0	50	1.00
452364--452389	13	2.0	13	100	0	52	53	0	7	38	1.30
458743--458775	8	4.1	8	96	0	57	21	0	27	51	1.48
459099--459165	27	2.5	25	77	17	64	62	0	1	35	1.04
459133--459197	25	2.6	24	80	9	67	49	0	4	46	1.22
459160--459216	26	2.2	26	81	6	62	43	0	7	49	1.29
462537--462608	29	2.5	28	77	8	74	59	6	12	20	1.56
463461--463485	8	3.1	8	100	0	50	12	0	0	88	0.53
464103--464158	18	3.3	18	66	19	57	53	19	5	21	1.65
464073--464158	32	2.7	32	98	1	165	51	19	5	23	1.68
467217--467403	92	2.0	92	95	0	338	41	18	12	27	1.87
468289--468313	6	4.2	6	100	0	50	68	0	16	16	1.22
469342--469374	17	2.0	17	88	5	50	21	9	0	69	1.15
470614--470645	3	10.7	3	100	0	64	34	0	0	65	0.93
470859--470891	15	2.1	16	88	5	50	60	15	0	24	1.35
472326--472381	3	18.3	3	77	3	58	42	1	0	55	1.10
473117--473141	13	1.9	13	100	0	50	56	4	32	8	1.47
473639--473678	18	2.1	20	86	9	57	45	0	2	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473929--473964	2	18.0	2	100	0	72	50	0	0	50	1.00
474449--474500	20	2.5	20	76	11	52	26	5	3	63	1.34
476591--476878	40	7.1	41	70	8	176	29	19	17	33	1.95
476602--477011	123	3.3	123	79	4	384	30	19	17	32	1.95
476712--476951	42	5.8	42	71	6	159	30	22	18	29	1.97
483119--483156	20	1.9	20	88	0	58	28	31	26	13	1.93
484841--484867	12	2.2	12	100	0	54	37	25	29	7	1.83
489734--490122	43	9.0	43	89	1	564	40	20	18	21	1.92
492635--493045	136	3.1	136	89	3	625	34	14	19	31	1.92
494902--495071	75	2.3	75	89	0	250	31	13	22	32	1.93

Tables:   1   2   3   4   5