genome.fa.s8273.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008273.1 Hibiscus syriacus cultivar Beakdansim tig00110930_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1042195

Tables:   1   2   3   4   

This is table  1  of  4  ( 396 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5410--5471	2	31.0	2	100	0	124	50	0	0	50	1.00
7008--7053	16	2.8	16	93	3	74	52	6	21	19	1.69
9869--9902	17	1.9	18	88	5	52	35	0	0	64	0.94
15338--15367	10	2.9	10	95	5	51	26	3	0	70	1.03
22460--22572	35	3.2	34	85	5	145	42	21	0	35	1.59
23622--23733	35	3.2	34	85	2	143	34	0	22	41	1.60
24209--24239	16	1.9	16	93	0	53	19	6	54	19	1.65
25249--25762	253	2.0	256	87	7	740	41	19	11	27	1.86
27025--27087	32	2.0	32	100	0	126	31	12	19	36	1.89
30086--30122	10	3.7	10	85	0	56	27	37	0	35	1.57
30080--30125	20	2.3	20	96	0	83	32	34	0	32	1.58
30169--30227	8	7.4	8	73	21	52	27	0	1	71	0.96
30155--30227	24	3.0	23	83	15	94	28	0	1	69	0.96
32351--32446	20	5.0	20	75	10	101	23	21	29	25	1.99
32352--32444	18	4.9	18	81	7	105	22	21	30	25	1.99
32352--32446	38	2.5	38	85	0	136	24	21	29	25	1.99
33709--33763	27	2.0	27	83	13	69	18	40	16	25	1.91
34889--34931	16	2.7	16	85	0	59	34	20	30	13	1.92
38411--38465	28	2.0	28	85	0	74	25	7	16	50	1.70
43465--43496	2	16.0	2	100	0	64	50	0	0	50	1.00
50734--50919	93	2.0	93	98	0	363	31	29	22	16	1.96
58853--58899	24	2.0	24	86	0	67	46	19	21	12	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60633--60681	20	2.4	20	76	10	55	67	4	2	26	1.19
60751--60815	29	2.2	29	81	13	71	53	3	3	40	1.32
61821--61868	10	4.7	10	79	5	51	29	4	0	66	1.10
63490--63545	18	3.2	18	82	2	69	39	0	1	58	1.08
64438--64491	26	2.1	25	93	3	90	37	14	3	44	1.63
67126--67166	16	2.6	16	88	3	57	39	9	19	31	1.84
67239--67282	22	2.0	22	90	0	70	25	22	18	34	1.96
67973--68169	20	9.9	20	77	11	147	37	26	15	20	1.93
68693--68732	14	2.9	14	92	0	71	50	30	12	7	1.68
68777--68820	20	2.2	20	87	0	61	13	18	15	52	1.75
70977--71075	42	2.4	42	78	10	112	24	32	20	23	1.98
70977--71095	21	5.7	20	71	12	78	22	32	21	23	1.98
71413--71445	11	3.0	11	95	0	57	18	12	6	63	1.48
72465--72608	66	2.2	66	91	4	231	31	1	15	50	1.53
72434--72608	66	2.6	64	86	9	228	29	2	15	52	1.55
72683--72731	20	2.5	20	68	0	53	28	20	26	24	1.99
72720--72758	13	2.9	14	82	17	55	7	20	30	41	1.80
72720--72762	14	3.1	14	78	18	54	9	18	27	44	1.80
73544--73624	20	4.1	20	85	3	110	20	13	24	40	1.89
73544--73624	40	2.0	40	92	0	135	20	13	24	40	1.89
73544--73645	40	2.5	40	84	6	127	22	14	23	39	1.91
73642--73691	20	2.5	20	100	0	100	36	10	30	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77099--77152	28	2.0	27	85	10	74	59	7	0	33	1.25
78323--78677	176	2.0	178	97	2	671	36	13	26	23	1.92
84561--84597	15	2.5	15	90	0	56	40	10	18	29	1.85
92304--92363	30	2.0	30	93	6	104	33	6	16	43	1.74
92522--92561	20	1.9	22	90	10	66	37	40	10	12	1.77
95659--95718	30	2.0	30	93	6	104	33	6	16	43	1.74
95808--95885	21	4.0	21	76	19	80	23	35	26	14	1.93
95835--95864	15	2.0	15	100	0	60	26	33	26	13	1.93
95826--95885	20	3.2	20	77	22	85	23	40	26	10	1.86
96026--96065	20	1.9	22	90	10	66	37	40	10	12	1.77
96798--96831	17	1.9	18	88	5	52	50	5	8	35	1.58
96862--96942	27	2.9	29	70	7	69	53	3	1	41	1.27
96974--97021	18	2.6	18	78	12	53	45	2	0	52	1.12
96985--97029	16	2.7	16	83	16	56	46	0	0	53	1.00
97855--97894	17	2.3	18	83	12	57	65	0	0	35	0.93
98529--98592	32	2.0	32	96	0	119	54	9	0	35	1.33
98576--98697	26	4.6	26	70	18	99	54	16	0	28	1.42
98539--98837	80	3.7	80	93	3	465	53	12	0	33	1.39
98602--98890	54	5.3	54	76	16	299	52	12	0	34	1.42
98655--98728	22	3.2	22	70	16	60	55	17	0	27	1.42
98721--98774	14	3.6	14	72	18	54	57	5	0	37	1.22
98699--99002	32	10.4	31	72	25	270	53	10	0	35	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98765--98813	22	2.2	22	85	3	62	55	12	0	32	1.37
98817--98859	22	2.0	22	95	0	77	48	9	2	39	1.48
98839--98952	31	3.5	31	75	19	124	54	11	0	33	1.42
98905--99002	31	3.4	32	72	25	83	57	7	0	35	1.26
98840--99031	67	2.8	66	82	7	201	53	9	1	35	1.41
98982--99063	15	5.9	14	70	11	69	50	3	1	45	1.27
99920--99944	2	12.5	2	100	0	50	52	0	0	48	1.00
105378--105425	24	2.0	24	84	4	62	16	14	12	56	1.68
105388--105439	24	2.1	24	82	3	59	13	17	13	55	1.69
105997--106039	13	3.1	14	86	10	52	62	0	2	34	1.08
106089--106144	23	2.5	23	88	8	80	50	7	0	42	1.30
109368--109412	8	5.5	8	80	15	56	73	0	26	0	0.84
112906--112963	28	2.0	29	90	3	91	37	18	17	25	1.93
121077--121134	20	2.9	20	73	17	57	24	5	5	65	1.34
121077--121153	40	1.9	40	81	5	93	22	10	3	63	1.42
121659--121772	41	2.8	41	97	0	210	14	20	24	41	1.89
121657--121769	20	5.6	20	66	19	72	13	21	24	40	1.89
121679--121745	21	3.2	21	68	19	68	14	20	26	37	1.92
121855--121891	6	6.2	6	100	0	74	35	48	16	0	1.46
127914--127949	17	2.1	17	90	10	56	36	16	25	22	1.94
130004--130112	35	3.0	36	91	5	175	44	19	5	30	1.73
130044--130104	21	3.2	21	63	29	55	42	19	4	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134581--134699	37	3.3	36	89	5	170	43	18	5	32	1.72
134581--134692	35	3.1	35	89	3	161	43	18	4	33	1.70
143069--143100	2	15.5	2	93	6	55	50	0	3	46	1.17
144481--144878	41	9.9	41	91	5	602	19	21	24	35	1.96
144481--145043	103	5.6	102	74	9	296	19	20	24	35	1.95
144867--145124	41	6.3	41	93	0	419	18	18	24	37	1.94
144481--144940	82	5.7	82	86	6	431	19	20	24	35	1.96
144805--145063	62	4.2	62	81	3	333	21	18	25	35	1.95
145161--145199	6	6.5	6	100	0	78	33	51	15	0	1.44
145797--145862	19	3.3	19	70	12	60	40	21	21	16	1.91
145806--146136	41	8.1	40	90	3	357	37	24	20	17	1.93
145806--146136	82	4.0	82	89	3	472	37	24	20	17	1.93
145831--146136	123	2.5	123	88	3	447	37	24	20	17	1.94
145872--146136	41	6.5	41	92	0	433	37	24	20	17	1.94
146626--146690	21	3.0	21	73	13	60	43	15	10	30	1.81
150649--150689	21	2.0	21	85	0	55	17	9	2	70	1.25
150848--150929	39	2.1	39	90	0	128	31	19	14	34	1.92
152569--152647	41	2.0	40	94	2	140	25	2	7	64	1.33
154183--154220	18	2.1	19	85	5	51	42	2	0	55	1.14
155957--156206	108	2.3	108	94	2	437	31	20	14	33	1.93
163367--163418	3	17.3	3	82	7	61	32	0	0	67	0.91
170837--170868	16	2.0	16	93	0	55	9	6	21	62	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174582--174740	79	2.0	80	93	3	275	48	10	11	29	1.73
175385--175424	2	20.0	2	100	0	80	50	0	0	50	1.00
185096--185131	17	2.1	18	90	10	58	47	27	0	25	1.52
185752--185796	22	2.0	22	87	8	65	42	20	2	35	1.64
186093--186269	64	2.8	64	86	1	239	26	18	22	32	1.97
186093--186317	64	3.5	64	84	3	222	27	19	21	32	1.97
189363--189400	3	12.7	3	100	0	76	65	0	0	34	0.93
190140--190178	19	2.1	19	95	0	69	51	0	5	43	1.24
192777--192826	25	2.1	24	82	10	59	76	6	2	16	1.08
193394--193432	18	2.2	18	85	0	51	46	0	0	53	1.00

Tables:   1   2   3   4