Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008273.1 Hibiscus syriacus cultivar Beakdansim tig00110930_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1042195

Tables:   1   2   3   4   

This is table  4  of  4  ( 396 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
842874--842907
11
3.0
11
87
8
50
17
32
29
20
1.96
844057--844081
3
8.3
3
100
0
50
32
0
0
68
0.90
844341--844405
26
2.5
26
85
9
89
52
0
0
47
1.00
845102--845177
30
2.5
30
81
8
93
34
15
14
35
1.88
850398--850442
22
2.1
21
84
12
56
53
8
28
8
1.62
857326--857434
55
1.9
56
92
3
184
30
25
18
25
1.98
864519--864836
158
2.0
159
98
1
613
37
19
18
25
1.94
867199--867236
16
2.4
17
91
8
62
52
5
0
42
1.24
867345--867370
9
2.9
9
100
0
52
34
11
11
42
1.77
869893--869985
28
3.3
28
68
4
80
36
9
18
35
1.84
872176--872215
20
2.0
20
95
0
71
35
12
12
40
1.81
876014--876099
40
2.2
38
79
4
91
33
11
11
43
1.77
877263--877297
2
17.5
2
100
0
70
51
0
0
48
1.00
897693--897742
25
2.1
23
82
10
57
54
12
4
30
1.55
899704--900947
420
3.0
420
93
1
2068
29
26
17
26
1.98
903597--903634
20
1.9
20
84
10
51
15
15
21
47
1.82
904540--904590
17
3.0
17
85
8
68
68
0
1
29
1.00
904547--904590
23
1.9
23
86
9
63
70
0
0
29
0.88
931023--931047
12
2.1
12
100
0
50
40
24
16
20
1.91
934076--934141
26
2.6
26
92
2
116
37
9
3
50
1.50
934420--934479
30
2.0
30
100
0
120
46
20
20
13
1.83
941433--941459
2
13.5
2
100
0
54
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
958228--958284
25
2.3
25
87
0
78
43
3
7
45
1.48
958299--958326
14
2.0
14
100
0
56
28
0
0
71
0.86
968907--968968
13
4.9
13
78
13
67
62
14
8
14
1.52
968916--968972
23
2.5
23
100
0
114
61
14
8
15
1.56
969235--969290
24
2.2
26
90
9
98
53
16
12
17
1.73
969236--969291
14
4.1
14
78
21
66
53
16
14
16
1.73
979989--980095
36
3.0
36
87
0
151
42
13
11
33
1.79
984878--987831
741
4.0
744
98
1
5710
36
16
17
30
1.92
999433--999457
13
1.9
13
100
0
50
24
4
8
64
1.38
1000248--1000289
14
3.0
14
76
10
50
16
0
14
69
1.20
1000282--1000320
15
2.8
14
84
7
53
38
0
5
56
1.22
1005118--1005170
27
2.0
27
85
7
72
26
28
16
28
1.97
1014688--1014748
22
2.7
22
82
9
79
47
11
0
40
1.40
1033530--1033720
93
2.1
93
100
0
382
19
27
15
37
1.92

Tables:   1   2   3   4

The End!