genome.fa.s8273.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008273.1 Hibiscus syriacus cultivar Beakdansim tig00110930_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1042195

Tables:   1   2   3   4   

This is table  2  of  4  ( 396 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193620--193706	46	1.9	46	92	2	149	45	12	9	32	1.74
212580--212763	92	2.0	89	92	4	305	28	14	4	52	1.61
216859--216931	18	3.9	18	82	7	101	28	31	20	19	1.97
216863--216937	38	2.0	38	97	0	141	30	29	20	20	1.97
217555--217604	17	2.7	19	84	12	77	22	32	18	28	1.97
218633--218689	30	1.9	30	85	0	78	40	22	26	10	1.86
218917--218963	24	1.9	25	86	4	69	40	10	19	29	1.85
227695--227875	90	2.0	90	94	2	319	26	23	7	43	1.79
232362--232939	85	6.9	86	74	11	436	49	7	19	23	1.73
232362--232835	174	2.8	173	82	8	496	48	7	19	23	1.75
232362--233000	43	15.3	41	72	14	370	49	7	19	24	1.73
233046--233070	13	1.9	13	100	0	50	72	0	4	24	1.02
233880--233910	15	2.1	15	100	0	62	38	12	6	41	1.69
234342--234385	13	3.5	13	87	6	63	20	50	15	13	1.78
234436--234489	28	1.9	28	84	0	72	53	0	0	46	1.00
234507--234541	12	2.9	12	95	0	61	28	51	11	8	1.67
239044--239491	225	2.0	225	96	3	834	43	10	12	33	1.77
247116--247157	19	2.2	19	100	0	84	40	26	0	33	1.56
251949--252004	28	2.0	28	85	0	76	30	16	17	35	1.92
252516--252551	2	18.0	2	100	0	72	50	0	0	50	1.00
255097--255133	16	2.3	16	85	0	56	35	0	0	64	0.94
259745--259780	15	2.4	15	90	0	54	58	2	0	38	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259809--259846	16	2.4	16	86	8	51	57	0	0	42	0.98
261617--261647	16	1.9	16	93	0	53	29	19	12	38	1.89
262757--262787	14	2.2	14	100	0	62	41	12	0	45	1.42
267186--267521	180	1.9	180	98	0	654	51	13	4	30	1.61
269010--269068	21	2.8	21	76	0	73	22	38	28	10	1.86
276172--276246	9	8.2	9	70	21	50	20	4	1	74	1.05
276213--276254	18	2.3	18	84	8	50	23	0	2	73	0.94
276329--276365	13	2.8	13	87	0	56	29	0	0	70	0.88
276327--276365	20	2.0	20	94	0	69	30	0	0	69	0.89
288934--288959	3	8.7	3	100	0	52	65	0	34	0	0.93
293261--293296	10	3.5	10	92	3	54	11	11	27	50	1.72
293959--294488	265	2.0	265	98	0	1033	38	18	15	26	1.91
296821--296854	7	4.9	7	92	0	59	47	0	0	52	1.00
299300--299338	19	2.1	19	95	0	69	35	12	12	38	1.82
299774--299937	60	2.8	57	79	12	163	29	23	6	40	1.79
304845--304918	37	2.0	37	100	0	148	40	16	10	32	1.83
310500--310551	20	2.6	20	96	0	95	38	26	13	21	1.90
310541--310639	21	4.8	20	70	6	63	35	22	19	23	1.96
310607--310758	20	7.6	20	84	2	189	33	26	21	19	1.96
311138--311208	33	2.2	33	92	0	115	11	22	18	47	1.80
311329--311381	14	3.4	14	72	22	52	43	22	24	9	1.83
311341--311388	19	2.3	22	86	10	66	45	22	20	10	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311384--311502	19	7.1	18	69	23	89	10	24	21	44	1.82
311389--311504	33	3.5	33	93	1	205	9	24	20	45	1.80
313191--313659	92	5.1	93	96	2	876	22	12	18	46	1.82
313701--313798	19	5.4	19	75	16	84	44	28	17	9	1.79
313736--313827	33	2.8	32	90	6	141	45	28	18	7	1.76
313823--313957	19	7.6	19	75	16	128	11	19	23	45	1.82
313845--313901	14	3.7	14	77	20	60	10	21	22	45	1.82
313828--313920	33	2.8	33	95	0	168	10	20	21	47	1.80
315341--315376	14	2.6	14	95	0	63	33	0	22	44	1.53
315483--315583	19	5.6	19	83	14	142	43	17	23	14	1.87
315612--315903	19	16.4	19	83	14	392	14	20	18	47	1.82
315590--315903	52	5.9	52	87	9	337	14	20	18	46	1.83
318369--318415	24	2.0	24	87	8	69	38	21	14	25	1.92
319093--319461	20	18.5	20	86	5	451	20	18	26	34	1.96
324352--324426	37	2.0	37	85	10	100	48	5	1	45	1.33
324347--324428	38	2.2	38	80	14	98	50	4	1	43	1.31
328956--329038	41	2.0	44	83	11	111	46	6	16	30	1.71
330203--330253	16	3.1	16	81	10	59	37	0	0	62	0.95
333535--333579	23	2.0	23	81	0	54	15	20	11	53	1.72
336089--336116	2	14.0	2	100	0	56	50	0	0	50	1.00
351944--352007	6	11.0	6	98	1	114	34	14	0	51	1.42
353266--353298	16	2.1	16	100	0	66	57	24	12	6	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353360--353416	16	3.6	16	100	0	114	57	22	12	7	1.58
354367--354393	14	1.9	14	100	0	54	51	22	14	11	1.73
354347--354379	10	3.3	10	95	0	57	54	24	12	9	1.66
357229--357285	2	29.0	2	96	3	107	50	0	0	49	1.00
357614--357657	2	22.0	2	100	0	88	50	0	0	50	1.00
360423--360466	17	2.6	17	88	0	61	47	0	2	50	1.13
361313--361345	14	2.3	15	89	5	50	63	18	0	18	1.31
370817--371471	297	2.2	287	82	6	753	32	13	5	48	1.66
379606--379655	4	12.5	4	79	12	50	0	26	0	74	0.83
379608--379664	14	4.2	14	88	4	82	0	22	0	77	0.77
381534--381610	33	2.3	33	93	0	127	28	14	24	32	1.94
381904--381961	30	1.9	31	82	3	73	62	17	3	17	1.47
382627--382680	28	1.9	28	84	0	72	33	12	20	33	1.91
383100--383133	16	2.2	16	89	5	52	32	0	8	58	1.29
390627--390688	32	1.9	33	90	3	99	62	8	0	29	1.23
391320--391384	29	2.3	27	78	19	71	49	6	0	44	1.27
393899--393929	16	1.9	16	100	0	62	29	45	0	25	1.54
407620--407684	2	32.5	2	100	0	130	49	0	0	50	1.00
409482--409568	29	3.0	29	93	1	147	43	9	13	33	1.76
414249--414335	29	3.0	29	93	1	147	43	9	13	33	1.76
417253--417326	36	2.0	37	94	2	132	31	12	12	44	1.78
426177--426218	2	21.0	2	100	0	84	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428328--428468	59	2.4	59	84	7	178	41	4	19	34	1.71
428352--428444	29	3.2	29	70	19	84	41	3	19	35	1.67
429810--429857	16	3.0	16	79	11	62	47	25	12	14	1.79
430631--430707	32	2.4	32	85	6	95	35	24	14	25	1.93
441113--441201	3	29.7	3	100	0	178	67	0	32	0	0.91
466954--466983	15	2.0	15	100	0	60	53	0	13	33	1.40
473096--473138	22	2.0	22	90	0	68	13	23	44	18	1.86
480369--480411	22	2.0	22	100	0	86	9	23	48	18	1.76
482488--482514	2	13.5	2	100	0	54	0	51	0	48	1.00
488048--488083	18	2.0	18	100	0	72	33	16	16	33	1.92
488422--488500	23	3.2	23	78	10	86	29	5	6	59	1.43
502420--502502	23	3.6	23	91	0	130	20	28	25	25	1.99
510331--510404	37	2.0	37	84	7	96	51	4	1	43	1.29
510733--510787	23	2.4	23	90	0	92	25	23	20	30	1.98
513681--513753	2	39.0	2	85	13	102	49	0	0	50	1.00
514289--514363	31	2.4	31	88	0	105	18	12	32	37	1.88
515202--515249	18	2.8	17	75	9	53	27	16	8	47	1.75
515250--515274	12	2.1	12	100	0	50	48	12	8	32	1.69
520064--520120	17	3.2	17	78	14	62	47	0	1	50	1.11
520097--520136	13	3.0	13	88	3	53	60	0	0	40	0.97
520107--520139	13	2.5	13	95	0	57	66	0	0	33	0.92
523259--523510	125	2.0	126	99	0	497	25	15	19	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
525010--525052	2	21.5	2	100	0	86	48	0	0	51	1.00
525490--525561	36	2.0	36	100	0	144	33	25	13	27	1.94
526736--526828	46	2.0	46	100	0	186	43	18	21	17	1.89
530939--530970	12	2.7	12	95	0	55	46	0	40	12	1.42
535119--535164	24	1.9	24	86	8	67	52	4	6	36	1.47
555619--555695	39	2.0	39	92	0	127	31	15	16	36	1.91
556168--556208	20	2.0	20	100	0	82	36	14	19	29	1.92
556848--556934	31	2.8	31	91	1	129	41	13	9	35	1.77
559078--559111	18	1.9	18	88	5	52	41	2	2	52	1.31
565599--565668	2	36.5	2	88	8	110	50	0	1	48	1.09

Tables:   1   2   3   4