genome.fa.s8273.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008273.1 Hibiscus syriacus cultivar Beakdansim tig00110930_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1042195

Tables:   1   2   3   4   

This is table  3  of  4  ( 396 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
576568--576634	28	2.3	29	89	2	100	25	7	8	58	1.55
585997--586032	14	2.5	15	91	8	58	36	0	0	63	0.94
585992--586032	14	2.9	14	86	10	57	31	2	0	65	1.05
586001--586033	15	2.2	15	94	0	57	42	0	0	57	0.98
588775--589265	171	2.8	170	82	4	556	37	21	10	29	1.88
596090--596116	2	13.5	2	100	0	54	48	0	0	51	1.00
596372--596483	35	3.2	34	87	2	152	43	21	0	33	1.59
597529--597640	35	3.2	34	89	2	161	34	1	22	41	1.64
612973--613130	60	2.6	60	80	9	171	33	22	1	43	1.61
613258--613434	60	3.0	59	78	8	189	39	5	20	33	1.76
617553--617641	31	2.9	31	91	3	135	25	22	19	32	1.97
619495--619525	15	2.1	15	100	0	62	12	29	25	32	1.93
626811--626873	21	3.0	21	93	4	110	6	12	9	71	1.30
630707--630813	51	2.1	51	94	0	187	32	14	16	36	1.89
632473--632504	11	2.9	11	100	0	64	43	0	56	0	0.99
633111--633140	2	15.0	2	100	0	60	50	0	0	50	1.00
640734--640769	18	2.1	17	89	5	54	44	2	0	52	1.15
640785--641015	2	116.5	2	66	17	72	49	2	3	43	1.34
640855--640956	30	2.9	33	72	22	84	50	4	2	42	1.39
640907--640955	15	3.3	15	83	11	64	48	8	2	40	1.44
641460--641498	14	2.8	14	84	0	51	41	2	2	53	1.28
641811--641849	17	2.5	15	84	12	51	48	2	7	41	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642077--642145	2	34.0	2	85	8	68	47	8	1	42	1.43
642242--642296	7	7.9	7	81	0	65	47	32	0	20	1.50
642233--642296	14	4.6	14	78	0	65	46	32	0	20	1.51
642233--642296	21	3.0	20	73	8	56	46	32	0	20	1.51
642667--642739	4	18.8	4	94	5	132	24	0	24	50	1.49
643583--643675	14	6.6	14	80	4	80	48	29	1	21	1.57
643596--643671	7	10.9	7	76	10	66	50	28	0	21	1.49
643596--643675	21	3.8	21	79	9	74	50	28	0	21	1.49
644111--644148	16	2.4	16	86	4	51	39	13	26	21	1.89
654944--655098	60	2.6	59	75	10	161	33	17	5	43	1.73
655259--655350	28	3.1	27	69	22	69	38	7	20	33	1.81
655367--655458	29	3.2	28	72	6	76	44	2	16	36	1.60
655362--655476	58	2.0	58	84	0	149	44	4	16	34	1.68
658092--658157	32	2.1	32	97	0	123	37	10	22	28	1.88
660387--660415	14	2.1	14	100	0	58	58	6	13	20	1.58
660411--660538	67	1.9	67	85	4	175	39	3	10	46	1.55
660642--660680	19	2.1	19	90	0	60	56	0	2	41	1.13
661781--661832	19	2.7	19	74	8	52	34	1	0	63	1.06
664455--664615	78	2.1	78	93	0	277	49	13	13	23	1.77
667475--667647	60	2.9	60	82	1	195	43	4	18	34	1.69
668609--668640	2	16.0	2	100	0	64	50	0	50	0	1.00
671487--671541	27	2.0	28	85	7	76	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
671499--671573	25	3.2	23	75	17	57	54	1	0	44	1.08
672086--672127	18	2.3	18	95	0	75	33	0	16	50	1.46
672452--672494	22	2.0	22	86	8	63	60	0	0	39	0.97
677847--677882	2	18.0	2	94	0	63	47	0	0	52	1.00
679655--679712	31	1.9	31	85	3	82	43	15	1	39	1.57
680262--680328	20	3.4	19	78	12	64	64	1	1	32	1.12
680637--680703	16	4.1	17	68	12	50	28	1	5	64	1.26
680727--680756	7	4.1	7	95	4	51	26	0	0	73	0.84
680726--680772	14	3.3	14	79	11	51	34	0	2	63	1.06
680737--680802	24	2.9	23	82	8	73	36	1	1	60	1.15
680731--680805	31	2.4	31	72	16	75	33	2	1	62	1.17
684476--684512	19	1.9	19	94	0	65	32	5	29	32	1.80
690659--690883	71	3.0	75	89	5	325	19	24	19	36	1.95
695778--696207	211	2.0	214	97	2	814	28	17	15	38	1.90
696239--696296	26	2.2	26	96	0	107	12	6	31	50	1.66
697897--698023	40	3.2	40	78	0	146	24	20	13	41	1.88
699713--699771	29	2.0	29	100	0	118	23	13	13	49	1.78
699962--699993	16	2.0	16	100	0	64	25	0	18	56	1.42
702862--702920	29	2.0	29	100	0	118	23	13	13	49	1.78
706018--706057	20	2.0	20	85	0	53	35	2	10	52	1.48
709796--709822	6	4.5	6	100	0	54	18	0	14	66	1.25
721928--722141	111	1.9	111	95	0	383	36	6	11	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
723985--724043	3	19.7	3	85	0	73	32	25	35	6	1.82
726310--726386	40	1.9	39	97	2	145	62	7	1	28	1.31
730356--730454	43	2.3	43	100	0	198	29	21	16	33	1.95
732650--732818	84	2.0	84	96	0	311	37	17	11	33	1.86
738921--738980	23	2.6	23	97	0	111	38	11	21	28	1.89
739642--739691	21	2.4	21	72	0	55	32	10	16	42	1.81
742022--742360	173	2.0	165	94	4	597	34	14	21	30	1.93
745081--745183	35	2.9	36	78	16	101	56	8	7	27	1.57
747411--747449	18	2.2	18	90	4	62	64	0	5	30	1.15
747939--747963	2	12.5	2	100	0	50	48	0	0	52	1.00
748071--748099	14	2.0	15	93	6	51	55	0	0	44	0.99
752340--752379	19	2.0	20	85	9	55	67	0	30	2	1.04
768021--768469	229	2.0	227	94	0	790	45	8	7	39	1.61
768535--768581	20	2.4	19	89	10	76	55	10	17	17	1.69
768702--768748	20	2.4	19	79	10	58	55	8	17	19	1.67
770705--770766	18	3.4	18	88	0	88	38	6	33	20	1.79
770705--770766	6	10.3	6	83	0	61	38	6	33	20	1.79
770720--770770	3	17.0	3	83	0	66	37	3	33	25	1.74
770708--770770	12	5.2	12	90	0	81	36	6	33	23	1.80
772138--772806	184	3.7	184	97	0	1254	34	14	15	34	1.89
774080--774142	23	2.7	23	90	0	90	36	6	19	38	1.77
774080--774152	23	3.2	23	86	3	85	35	5	19	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
774736--774788	3	17.7	3	92	0	88	33	3	0	62	1.13
775632--775964	161	2.1	160	94	1	594	46	12	8	31	1.73
783395--783428	14	2.4	14	90	0	50	55	0	5	38	1.24
787961--788017	15	3.6	15	75	13	60	42	12	12	33	1.80
787964--787998	18	1.9	18	94	0	61	37	11	11	40	1.77
788413--788467	13	4.2	13	75	13	58	49	12	3	34	1.59
788453--788551	33	3.0	33	94	1	164	45	15	7	32	1.73
788546--788585	21	1.9	21	94	0	71	47	7	15	30	1.72
796342--796395	23	2.3	23	80	0	63	53	20	12	12	1.71
796643--796712	20	3.4	20	75	7	68	30	25	12	31	1.93
796643--796760	42	2.9	39	79	6	119	27	26	12	33	1.93
796777--796816	20	2.0	20	95	0	71	25	32	15	27	1.95
796744--796795	27	1.9	27	88	0	77	30	25	13	30	1.94
796782--796842	27	2.3	27	80	5	70	27	27	11	32	1.91
796809--796853	20	2.2	20	84	0	54	33	26	13	26	1.93
797019--797090	27	2.7	27	93	0	117	29	13	25	31	1.94
797120--797191	20	3.5	20	81	7	81	30	11	27	30	1.91
797122--797197	21	3.7	20	79	8	80	30	10	27	31	1.90
801233--801294	26	2.3	26	76	15	63	46	6	0	46	1.28
801810--801863	23	2.3	22	84	12	72	27	1	1	68	1.10
801811--801865	25	2.3	23	84	6	74	27	1	1	69	1.09
807848--807906	29	2.0	30	86	3	84	42	13	11	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
808637--808696	24	2.5	24	78	7	61	26	11	5	56	1.55
824731--824797	33	2.0	33	97	0	125	41	5	14	37	1.71
825009--825082	38	1.9	38	83	0	94	33	31	12	22	1.91
827203--827409	102	2.0	105	91	5	339	34	9	17	38	1.82
828069--828108	20	2.0	20	95	4	73	20	17	10	52	1.72
829887--829913	14	1.9	14	100	0	54	48	7	22	22	1.75
838564--838594	16	1.9	16	100	0	62	58	19	12	9	1.62
838673--838725	16	3.3	16	97	0	97	56	20	13	9	1.64
839470--839525	14	4.3	14	80	17	66	53	25	12	8	1.67
839449--839524	24	3.2	24	88	3	100	55	21	11	11	1.68

Tables:   1   2   3   4