genome.fa.s8290.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008290.1 Hibiscus syriacus cultivar Beakdansim tig00110954_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1890093

Tables:   1   2   3   4   5   6   7   8   9   

This is table  1  of  9  ( 972 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4207--4240	9	3.7	9	92	7	59	88	8	2	0	0.62
4206--4240	10	3.6	10	84	7	54	88	8	2	0	0.61
4207--4247	19	2.2	18	87	12	57	82	9	4	2	0.89
13674--13709	14	2.6	14	86	13	56	0	22	0	77	0.76
18904--18957	24	2.3	23	81	9	65	61	14	16	7	1.55
36182--36234	24	2.3	24	83	6	65	7	16	15	60	1.57
38819--38864	24	1.9	24	82	8	58	39	8	17	34	1.80
44420--44466	23	2.0	23	83	0	58	10	10	12	65	1.46
73358--73887	273	1.9	273	94	0	943	36	14	16	33	1.89
82688--82743	11	4.8	11	72	20	51	3	16	1	78	0.97
84299--84341	15	2.8	16	80	16	54	55	4	6	32	1.47
97449--97492	17	2.6	17	88	0	61	22	15	31	29	1.95
99858--99910	24	2.2	24	82	0	61	20	11	37	30	1.88
111065--111104	20	1.9	22	85	10	57	25	17	10	47	1.78
122488--122523	14	2.6	14	86	13	56	0	22	0	77	0.76
124787--124830	22	2.0	22	81	0	52	27	34	0	38	1.57
130294--130348	24	2.3	25	81	6	60	29	21	16	32	1.95
134451--134510	23	2.6	23	84	5	68	78	10	11	0	0.97
134532--134578	14	3.1	15	75	12	51	72	6	19	2	1.17
136824--136860	18	2.1	18	100	0	74	40	5	16	37	1.71
142036--142079	22	2.0	22	95	0	79	27	9	43	20	1.82
142038--142084	12	4.0	12	86	13	62	27	8	44	19	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171898--171955	13	4.7	13	70	12	50	27	41	1	29	1.66
171891--171967	36	2.2	35	95	2	136	28	38	3	28	1.75
171891--171991	35	2.9	35	87	1	121	28	35	2	32	1.73
185287--185337	19	2.6	20	90	3	77	43	5	15	35	1.71
188695--188744	16	3.1	16	77	13	57	4	16	4	76	1.10
189470--189520	19	2.6	20	90	3	77	43	5	15	35	1.71
193971--194041	13	5.7	13	77	9	76	26	42	0	30	1.56
194114--194140	11	2.5	11	100	0	54	25	37	0	37	1.57
194225--194260	15	2.3	15	90	4	54	16	22	0	61	1.35
197771--197810	20	1.9	20	85	10	53	32	7	32	27	1.85
198421--198457	16	2.3	16	100	0	74	27	29	5	37	1.79
205314--205360	24	2.0	24	87	8	69	17	4	2	76	1.04
205323--205362	15	2.6	16	84	8	55	17	2	2	77	0.99
212575--212628	28	1.9	28	81	7	65	31	11	16	40	1.84
213681--213776	50	1.9	50	83	8	124	36	20	21	20	1.95
215513--215591	35	2.3	35	93	0	131	32	2	36	27	1.71
217827--218075	124	2.0	124	92	0	417	35	12	12	39	1.80
227727--227756	13	2.4	13	94	5	53	43	0	30	26	1.55
239532--239577	18	2.6	18	92	0	74	32	6	13	47	1.68
241095--241131	9	4.2	9	80	19	51	81	0	2	16	0.81
244670--244715	18	2.6	18	92	0	74	47	13	6	32	1.68
245771--245814	18	2.4	18	88	0	61	15	6	36	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
248989--249031	19	2.3	19	84	8	61	79	6	11	2	1.02
253683--253719	15	2.4	16	95	4	67	18	13	0	67	1.23
254059--254108	8	6.0	8	82	17	66	84	12	4	0	0.76
254060--254119	19	3.3	19	84	15	74	81	11	6	0	0.86
258972--258996	2	12.5	2	100	0	50	52	0	0	48	1.00
262371--262401	13	2.4	13	94	0	53	83	6	6	3	0.88
262540--262574	15	2.3	15	100	0	70	31	14	25	28	1.95
268517--268545	14	2.0	15	93	6	51	10	0	27	62	1.28
269524--269564	22	1.9	21	90	5	64	19	4	36	39	1.73
270762--270814	18	3.2	17	89	7	65	52	0	1	45	1.11
270770--270815	2	23.5	2	91	4	76	50	0	2	47	1.13
275352--275390	2	19.5	2	94	0	69	48	0	2	48	1.15
285695--285725	10	3.1	10	90	0	53	9	29	0	61	1.28
287807--287857	26	1.9	27	88	4	77	5	21	11	60	1.52
287808--287865	26	2.2	26	81	6	64	8	20	10	60	1.55
300185--300286	16	6.2	17	72	17	74	46	7	9	36	1.66
300191--300290	50	2.0	50	100	0	200	46	8	10	36	1.67
311849--311910	24	2.6	25	76	7	74	33	19	11	35	1.87
315541--315591	19	2.6	20	87	3	68	41	5	15	37	1.72
319731--319781	19	2.6	20	87	3	68	41	5	15	37	1.72
324857--324897	22	1.9	21	90	5	64	34	36	2	26	1.70
325215--325263	21	2.2	21	86	13	64	73	4	16	6	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331563--331616	15	3.3	16	82	10	65	44	0	0	55	0.99
331555--331606	20	2.7	20	82	8	63	44	0	0	55	0.99
331558--331605	3	16.3	3	79	12	55	41	0	0	58	0.98
333078--333146	33	2.1	34	78	13	81	40	1	1	56	1.17
333869--333911	16	2.7	15	86	10	59	27	2	0	69	1.00
333872--333911	3	12.7	3	84	10	53	30	2	0	67	1.04
333867--333936	16	4.5	15	77	19	56	27	1	0	71	0.94
333907--333932	4	6.5	4	100	0	52	23	0	0	76	0.78
336247--336296	22	2.3	22	89	3	75	18	16	4	62	1.48
336261--336297	7	5.1	7	87	6	56	13	16	2	67	1.34
343164--343240	22	3.5	22	96	0	145	33	11	14	40	1.82
343757--344083	166	2.0	167	93	2	559	35	12	12	38	1.82
344086--344723	76	8.4	76	96	0	1150	23	19	22	34	1.97
344885--344932	14	3.7	12	78	15	51	45	0	0	54	0.99
346190--346252	33	2.0	33	84	6	85	41	0	1	57	1.08
347029--347063	13	2.7	13	90	0	61	31	34	22	11	1.90
347569--347613	23	2.0	23	90	0	72	26	0	37	35	1.57
350094--350134	19	2.2	19	95	0	73	21	7	29	41	1.80
353237--353267	15	2.1	14	94	5	53	48	0	12	38	1.42
354719--355155	216	2.0	216	93	0	739	34	16	16	32	1.92
359420--359459	21	1.9	21	84	0	53	25	2	7	65	1.32
369201--369253	23	2.3	23	96	0	97	32	18	16	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371780--371817	18	2.1	18	85	9	51	39	7	2	50	1.46
372356--372450	49	1.9	49	85	6	129	35	25	21	17	1.95
384467--384494	14	2.0	14	100	0	56	35	0	42	21	1.53
396246--396290	17	2.6	17	85	0	54	31	15	13	40	1.86
396324--396371	18	2.7	18	90	0	69	37	6	10	45	1.64
399999--400046	18	2.7	18	86	0	69	37	6	10	45	1.64
403630--405050	244	5.8	243	85	3	1834	47	9	13	29	1.74
403133--405050	733	2.7	718	84	4	2432	47	9	13	29	1.74
404930--405165	116	2.0	115	86	1	337	47	10	13	28	1.75
404682--405408	360	2.0	360	90	0	1130	46	9	13	30	1.75
405042--406315	244	5.2	244	84	2	1576	47	9	13	29	1.75
405778--406871	554	2.0	558	87	3	1600	46	10	13	29	1.76
406333--406851	243	2.1	245	85	3	681	46	9	13	30	1.74
407988--408065	30	2.6	30	87	4	113	25	16	23	34	1.95
410854--411713	240	3.6	239	82	6	975	49	9	11	29	1.70
412320--412353	13	2.6	13	100	0	68	47	0	0	52	1.00
414880--414916	14	2.6	14	95	0	65	21	21	32	24	1.98
423419--423466	23	2.1	23	88	0	69	35	12	18	33	1.89
423670--423736	30	2.2	29	82	10	73	43	0	4	52	1.21
423892--423954	23	2.7	23	92	0	99	38	20	4	36	1.74
424376--424441	34	1.9	34	93	0	114	18	16	16	48	1.82
424712--424748	18	2.1	18	89	0	56	51	10	5	32	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425186--425248	23	2.7	23	92	0	99	38	20	4	36	1.74
425434--425499	25	2.6	25	80	0	87	42	13	9	34	1.76
427965--428638	183	3.7	183	96	0	1190	33	16	14	34	1.90
430097--430177	3	27.0	3	75	0	72	23	34	6	35	1.80
430101--430189	12	7.4	12	84	0	88	21	34	7	35	1.82
430101--430192	18	5.1	18	77	0	76	20	34	7	36	1.81
430113--430189	36	2.1	36	90	0	118	20	35	9	35	1.85
430101--430192	6	15.3	6	79	0	67	20	34	7	36	1.81
431645--433194	198	7.8	199	96	0	2774	32	16	15	36	1.89
431645--433194	397	3.9	398	96	1	2785	32	16	15	36	1.89

Tables:   1   2   3   4   5   6   7   8   9