genome.fa.s8290.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008290.1 Hibiscus syriacus cultivar Beakdansim tig00110954_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1890093

Tables:   1   2   3   4   5   6   7   8   9   

This is table  8  of  9  ( 972 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1630851--1630946	50	1.9	51	86	2	140	25	16	19	38	1.92
1637874--1637925	21	2.5	21	96	0	95	59	5	11	23	1.53
1639666--1639696	16	1.9	16	100	0	62	67	0	0	32	0.91
1643115--1643139	8	3.1	8	100	0	50	12	0	0	88	0.53
1643155--1643190	16	2.3	15	90	4	54	36	0	11	52	1.37
1643317--1643373	15	3.7	15	79	9	69	21	33	28	17	1.96
1643317--1643385	32	2.2	32	91	0	111	21	31	27	18	1.97
1646841--1646947	34	3.2	34	78	12	89	35	0	3	60	1.14
1646871--1646943	34	2.2	34	81	13	91	39	0	1	58	1.06
1648092--1648139	21	2.3	21	85	0	60	25	39	12	22	1.89
1648146--1648211	21	3.1	22	91	4	100	19	36	24	19	1.95
1649706--1649734	13	2.1	14	93	6	51	41	0	0	58	0.98
1649750--1649808	23	2.7	23	94	5	104	45	11	3	38	1.58
1651200--1651228	9	3.0	10	90	10	51	58	0	0	41	0.98
1661886--1661936	18	2.9	17	78	13	59	50	11	0	37	1.39
1665884--1666043	65	2.5	65	86	7	211	27	17	23	31	1.97
1678673--1678882	106	2.0	106	93	0	357	31	20	15	31	1.94
1681583--1681692	2	54.5	2	93	1	175	50	0	45	2	1.22
1683800--1683832	17	1.9	17	93	0	57	45	12	9	33	1.73
1683861--1683905	20	2.2	20	96	0	81	26	24	13	35	1.92
1684005--1684045	19	2.1	20	86	4	57	36	14	14	34	1.87
1684592--1684619	11	2.5	11	100	0	56	0	28	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1689681--1689940	105	2.5	106	79	4	260	24	25	20	30	1.98
1689681--1689939	53	4.9	52	82	3	238	23	25	20	30	1.98
1690350--1690562	80	2.7	80	89	0	300	32	22	14	30	1.94
1690525--1690617	42	2.2	42	88	0	141	32	20	20	26	1.97
1690534--1690598	22	3.1	21	68	16	62	30	23	18	27	1.97
1690737--1690829	42	2.2	41	81	3	114	30	21	21	26	1.98
1712883--1712918	18	2.0	18	100	0	72	22	11	38	27	1.88
1715273--1715385	18	6.3	18	87	2	165	27	31	22	18	1.97
1715273--1715385	54	2.1	54	91	1	183	27	31	22	18	1.97
1715605--1715900	155	1.9	155	94	4	522	32	20	4	42	1.72
1716352--1716409	20	2.6	22	89	10	84	25	22	20	31	1.98
1718440--1718466	2	13.5	2	100	0	54	51	0	0	48	1.00
1718659--1718696	2	19.0	2	100	0	76	50	0	0	50	1.00
1720596--1720633	2	19.5	2	94	5	69	52	0	0	47	1.00
1721665--1721712	14	3.7	14	78	21	68	14	12	14	58	1.64
1721665--1721711	24	2.0	24	100	0	94	14	12	12	59	1.61
1721736--1721800	29	2.2	29	97	0	121	33	3	23	40	1.70
1723538--1723611	28	2.6	27	79	10	76	45	8	2	43	1.47
1727046--1727114	21	3.4	21	82	9	74	55	0	0	44	0.99
1727107--1727162	22	2.5	23	94	5	105	55	0	7	37	1.27
1728084--1728123	21	2.0	20	85	5	53	50	2	2	45	1.28
1731429--1731463	17	2.1	17	88	0	52	42	0	2	54	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1732881--1732968	26	3.4	27	84	7	119	27	14	15	42	1.87
1736022--1736073	21	2.5	21	81	3	61	38	19	25	17	1.93
1736062--1736216	20	7.7	20	83	6	161	32	24	18	24	1.97
1736082--1736216	61	2.2	61	85	0	189	33	24	17	24	1.96
1736381--1736425	22	2.0	22	95	0	81	20	46	15	17	1.84
1738054--1738098	18	2.5	18	88	0	72	26	44	15	13	1.83
1738578--1738644	20	3.4	20	81	2	73	38	23	22	14	1.92
1738633--1738690	14	3.9	14	79	16	71	48	24	17	10	1.78
1738617--1738707	32	2.8	33	94	3	166	47	21	18	12	1.81
1738724--1738813	14	5.9	14	71	19	72	12	17	21	48	1.79
1738719--1738829	32	3.4	32	93	1	186	12	18	20	47	1.81
1738770--1738868	20	5.4	19	72	11	75	14	18	23	44	1.86
1739692--1739725	17	2.0	17	94	0	59	38	11	5	44	1.65
1739757--1739821	19	3.7	19	84	15	95	46	18	21	13	1.84
1739840--1739877	20	1.9	20	94	0	67	15	21	23	39	1.92
1740035--1740264	115	2.0	115	98	0	442	32	10	31	26	1.90
1740324--1740418	20	4.7	20	79	7	93	23	18	25	32	1.97
1740345--1740439	41	2.3	41	85	3	120	21	20	24	34	1.96
1740489--1740529	21	2.0	21	85	0	55	34	31	17	17	1.93
1740530--1740598	28	2.5	28	97	0	129	26	14	31	27	1.95
1756926--1756955	13	2.3	13	94	0	51	40	16	16	26	1.90
1763420--1763539	64	1.9	64	96	0	222	42	12	12	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1763584--1764282	198	3.5	199	80	7	630	30	14	13	40	1.85
1763582--1764282	200	3.5	200	78	7	692	30	14	14	40	1.85
1766742--1766775	17	2.0	17	88	0	50	47	23	0	29	1.52
1768370--1769916	200	7.7	200	89	1	2129	32	15	13	37	1.87
1768370--1769916	401	3.9	399	88	1	2149	32	15	13	37	1.87
1770282--1770330	19	2.6	19	96	0	89	55	10	2	32	1.45
1772118--1772183	33	2.0	33	90	0	105	24	45	0	30	1.53
1772183--1772212	15	1.9	16	93	6	53	13	33	3	50	1.58
1772232--1772317	21	4.1	21	95	0	154	15	33	9	41	1.79
1774501--1774977	182	2.6	180	87	3	636	28	14	13	43	1.84
1777194--1779406	541	4.2	529	77	8	1846	34	13	22	29	1.93
1786053--1786097	19	2.4	19	92	0	81	28	4	4	62	1.34
1789250--1789412	81	2.0	82	96	1	301	34	5	15	43	1.71
1789632--1789656	12	2.1	12	100	0	50	48	0	0	52	1.00
1791420--1791447	2	14.0	2	100	0	56	50	0	0	50	1.00
1791936--1792027	47	1.9	48	82	6	116	45	23	11	18	1.83
1792201--1792341	60	2.3	59	78	4	156	31	21	4	42	1.72
1792201--1792383	60	3.1	58	76	10	147	30	22	4	42	1.73
1792735--1792779	22	2.1	22	87	4	65	53	13	0	33	1.40
1793360--1793428	30	2.2	32	82	7	88	34	18	13	33	1.90
1793536--1793570	15	2.3	15	85	0	52	42	20	22	14	1.88
1799454--1799849	198	2.0	196	96	3	726	28	10	13	47	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1800090--1800142	21	2.5	21	84	0	70	20	26	18	33	1.96
1800132--1800220	20	4.4	20	88	2	133	35	23	21	19	1.95
1800132--1800220	41	2.2	40	91	2	142	35	23	21	19	1.95
1800212--1800257	20	2.3	20	96	3	85	32	23	19	23	1.97
1801089--1801135	24	2.0	24	95	0	85	27	21	17	34	1.95
1802299--1802328	4	7.5	4	92	0	51	70	3	0	26	1.03
1802639--1802697	16	3.5	16	72	9	55	37	0	0	62	0.95
1805592--1805670	38	2.1	38	100	0	158	49	12	12	25	1.76
1805771--1805846	28	2.7	29	86	8	95	18	35	26	19	1.95
1806191--1806224	18	1.9	18	94	5	61	35	0	2	61	1.11
1808989--1809132	11	12.2	11	71	20	69	45	6	2	45	1.42
1808993--1809132	24	5.8	24	71	18	103	45	7	2	45	1.43
1809081--1809175	15	7.1	14	75	17	53	53	5	1	40	1.30
1809121--1809162	8	5.5	8	77	11	52	57	7	0	35	1.26
1809124--1809162	15	2.6	15	100	0	78	58	7	0	33	1.26
1809079--1809184	54	2.0	52	83	7	133	52	6	0	39	1.34
1809083--1809184	24	4.0	24	68	18	64	51	6	0	40	1.35
1809290--1809329	15	2.5	15	88	8	53	55	0	0	45	0.99
1809360--1809397	20	1.9	20	88	0	58	50	2	5	42	1.39
1809425--1809499	14	5.6	14	68	17	52	42	12	2	42	1.56
1809893--1809934	16	2.6	17	81	14	61	69	0	2	28	1.01
1812079--1812129	26	2.0	25	82	14	61	41	1	9	47	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1812321--1812377	20	3.2	16	80	20	69	52	8	0	38	1.33
1812419--1812453	4	8.8	4	87	0	52	51	20	0	28	1.47
1812779--1812896	45	2.4	50	79	9	129	51	11	1	35	1.47
1813293--1813350	29	2.0	29	82	0	71	15	27	37	18	1.92
1817943--1818003	7	8.4	7	89	7	95	13	0	1	85	0.68
1826649--1826699	26	2.0	26	96	0	93	27	19	31	21	1.97
1835046--1835165	54	2.2	54	92	0	195	34	17	18	30	1.94
1837634--1837693	21	2.9	20	74	16	59	58	10	6	25	1.55
1854686--1854773	9	10.1	9	73	17	53	39	0	1	59	1.05
1854681--1854770	16	5.3	16	73	19	67	40	1	1	57	1.13

Tables:   1   2   3   4   5   6   7   8   9