genome.fa.s8292.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008292.1 Hibiscus syriacus cultivar Beakdansim tig00110956_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1591938

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
905333--905371	20	2.0	20	94	0	69	15	12	17	53	1.72
905335--905378	20	2.2	20	87	0	61	15	13	18	52	1.75
905702--905750	22	2.2	23	78	10	57	22	12	44	20	1.84
905823--905862	19	2.1	19	100	0	80	35	5	15	45	1.68
907301--907372	35	2.1	35	83	0	90	34	0	22	43	1.54
916548--916632	31	2.7	31	81	3	100	42	3	4	49	1.41
927828--927876	21	2.3	21	79	6	64	22	24	18	34	1.96
927866--928037	20	8.6	20	88	1	236	41	18	20	19	1.90
928638--928692	14	3.6	14	77	17	65	9	23	23	43	1.82
928621--928711	32	2.8	33	93	3	157	10	21	23	43	1.84
928684--928770	19	4.5	19	98	1	156	14	22	26	35	1.94
928684--928779	39	2.5	40	93	3	160	14	22	23	38	1.92
928616--928779	19	9.1	19	77	15	143	12	23	22	41	1.88
930857--930949	42	2.2	42	82	0	114	21	36	16	25	1.94
932328--932364	14	2.6	14	88	12	58	29	0	21	48	1.50
932471--932602	33	4.0	33	88	2	176	46	18	18	15	1.84
932471--932595	19	7.4	19	65	26	66	47	18	18	16	1.83
932536--932607	19	4.1	19	76	20	66	50	20	15	13	1.78
932614--932705	19	5.4	18	68	24	74	13	22	18	45	1.84
932613--932705	33	2.8	33	95	0	159	12	22	19	45	1.84
935033--935057	12	2.1	12	100	0	50	0	28	0	72	0.86
935231--935284	24	2.2	24	93	0	90	42	20	14	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
935231--935298	24	2.8	24	86	0	64	39	20	14	25	1.91
936057--936108	21	2.5	21	87	3	70	38	17	23	21	1.93
936097--936195	20	4.9	20	79	7	83	33	24	18	24	1.97
936477--936530	14	3.5	14	77	22	63	11	20	20	48	1.80
936459--936529	33	2.2	33	84	0	88	19	19	21	39	1.93
938105--938198	42	2.3	42	87	5	138	20	14	41	23	1.89
938534--938586	20	2.7	20	87	0	70	33	28	13	24	1.93
938540--938646	20	5.4	20	82	5	110	37	25	20	16	1.93
938635--938693	14	3.9	14	76	20	64	49	23	16	10	1.77
938619--938698	33	2.4	33	97	0	151	47	22	18	11	1.80
938705--938768	19	3.6	19	74	20	75	12	20	21	45	1.84
938753--938807	20	2.8	20	91	2	85	16	27	23	32	1.96
940690--940748	20	3.0	20	87	0	73	44	22	18	15	1.87
941011--941054	22	2.0	22	95	0	79	18	15	45	20	1.85
941241--941313	20	3.7	20	81	0	92	27	16	26	30	1.97
941324--941379	21	2.7	21	94	0	94	21	21	17	39	1.93
941448--941541	40	2.3	40	98	0	179	29	15	26	27	1.96
941514--941559	19	2.3	20	81	7	58	26	17	28	28	1.98
946073--946113	21	2.0	21	90	0	64	43	24	9	21	1.83
947721--947751	14	2.2	14	94	0	53	22	12	25	38	1.90
948805--948851	2	23.5	2	100	0	94	51	0	0	48	1.00
949930--949979	26	2.0	26	88	11	77	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
952374--952430	29	2.0	29	96	0	105	14	33	31	21	1.92
952531--952610	10	7.3	10	72	18	61	8	38	30	22	1.84
952577--952604	14	2.0	14	100	0	56	7	28	42	21	1.79
952519--952610	33	2.8	33	84	1	103	7	39	29	23	1.83
955518--955580	20	3.2	20	66	20	60	46	9	25	19	1.80
955504--955581	39	2.0	39	100	0	156	46	7	25	20	1.77
955504--955565	19	3.2	19	66	20	56	48	6	25	19	1.72
963493--963622	60	2.3	55	81	11	145	33	15	18	32	1.92
967730--967897	20	8.2	20	73	8	115	40	24	18	16	1.91
967787--967888	42	2.4	42	91	0	168	37	26	18	17	1.93
968005--968054	6	8.5	6	97	2	93	32	52	16	0	1.44
968551--968698	6	25.5	6	99	0	261	0	16	52	31	1.45
968803--968884	22	4.0	22	80	19	113	18	19	30	31	1.96
968801--968970	20	9.0	19	75	21	112	15	19	27	37	1.92
968876--968901	13	2.0	13	100	0	52	15	23	23	38	1.92
968814--968910	33	2.6	37	81	18	114	17	19	28	34	1.95
968896--968944	18	2.6	19	90	6	73	16	22	20	40	1.91
982785--982836	20	2.6	20	96	0	95	38	26	13	21	1.90
982826--982924	21	4.8	20	72	6	72	36	23	19	21	1.95
982891--983084	20	9.6	20	81	5	221	35	25	19	19	1.95
982891--983084	60	3.2	60	83	0	253	35	25	19	19	1.95
983466--983536	33	2.2	33	92	0	115	11	22	18	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
983657--983711	14	3.6	14	73	21	56	40	23	27	9	1.85
983657--983727	33	2.2	33	92	0	115	42	25	23	8	1.82
983723--983820	19	5.7	19	70	22	81	10	24	22	42	1.84
983745--983834	14	5.7	14	74	23	81	8	25	23	42	1.83
983728--983842	33	3.5	33	95	0	212	9	24	20	45	1.81
985541--985922	185	2.1	186	97	0	739	22	12	18	46	1.82
985541--985920	93	4.1	93	98	0	735	22	12	18	46	1.82
985964--986092	19	7.3	19	75	17	125	45	28	17	8	1.77
986000--986092	33	2.8	32	91	4	150	46	27	18	7	1.76
985964--986092	52	2.5	52	74	14	140	45	28	17	8	1.77
986088--986223	19	7.6	19	75	17	130	10	19	24	46	1.80
986110--986167	14	3.7	14	74	24	53	8	20	24	46	1.78
986093--986186	34	2.8	33	95	3	170	9	20	22	47	1.78
988041--988113	38	1.9	38	97	0	137	28	1	16	53	1.51
988036--988100	19	3.4	19	64	8	51	24	1	15	58	1.46
988095--988130	14	2.6	14	95	0	63	33	0	22	44	1.53
988237--988338	19	5.6	19	84	13	151	44	17	23	14	1.86
988367--988692	19	18.4	19	80	15	405	14	20	17	47	1.82
988345--988664	52	6.0	52	94	4	550	14	21	16	46	1.83
988367--988692	71	4.6	72	82	13	389	14	20	17	47	1.82
988345--988664	161	2.0	157	93	3	552	14	21	16	46	1.83
988386--988692	33	8.8	33	80	12	280	14	20	17	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
990997--991021	12	2.1	12	100	0	50	0	28	0	72	0.86
991196--991242	24	2.0	24	87	8	69	38	21	14	25	1.92
991916--992324	20	20.5	20	85	5	486	20	18	25	35	1.95
994796--994883	45	2.0	45	82	6	108	31	7	13	46	1.72
1007327--1007412	35	2.5	35	84	0	100	40	20	1	37	1.61
1007381--1007423	21	2.0	21	100	0	86	46	13	0	39	1.44
1007546--1007579	16	2.0	18	88	11	54	26	2	5	64	1.30
1008023--1008270	130	1.9	130	92	0	415	37	12	14	35	1.84
1008608--1008684	35	2.2	35	85	0	100	37	22	1	38	1.62
1008804--1008835	15	2.0	17	88	11	50	28	3	6	62	1.34
1009304--1009551	130	1.9	130	94	0	433	36	12	14	35	1.85
1009656--1010838	588	2.0	590	98	0	2325	37	10	15	36	1.82
1010835--1010879	24	2.0	23	86	8	65	33	4	0	62	1.15
1011152--1011211	30	2.0	30	83	6	77	43	1	6	48	1.39
1016740--1016780	2	20.5	2	100	0	82	51	0	0	48	1.00
1022146--1022214	30	2.2	30	82	15	86	36	5	15	42	1.72
1022155--1022214	30	2.0	30	90	6	95	35	6	15	43	1.72
1022385--1022460	21	3.7	21	87	1	100	22	32	14	30	1.94
1022825--1022895	34	2.1	33	89	2	106	33	14	26	25	1.94
1023754--1023801	19	2.5	20	82	3	62	52	6	10	31	1.60
1025065--1025133	30	2.2	30	85	15	95	34	5	17	42	1.73
1025074--1025133	30	2.0	30	93	6	104	33	6	16	43	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1025213--1025239	13	2.1	13	100	0	54	25	29	22	22	1.99
1025296--1025392	21	4.7	21	92	1	151	21	34	15	28	1.94
1025757--1025827	34	2.1	33	92	2	115	32	14	28	25	1.94
1033882--1034064	99	1.8	99	83	4	244	28	18	31	21	1.97
1035242--1035625	200	1.9	202	84	9	518	28	2	11	57	1.48
1047963--1048003	21	2.0	21	85	0	55	53	9	9	26	1.65
1047972--1048019	21	2.2	22	85	3	62	54	6	10	29	1.59
1050198--1050245	21	2.3	20	82	10	60	31	16	6	45	1.72
1051356--1051482	51	2.5	51	84	1	157	15	34	30	18	1.93
1051597--1051635	20	2.0	19	90	5	60	33	23	0	43	1.54

Tables:   1   2   3   4   5   6   7   8