genome.fa.s8292.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008292.1 Hibiscus syriacus cultivar Beakdansim tig00110956_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1591938

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1463770--1463807	19	2.0	20	84	5	51	34	2	28	34	1.71
1467214--1467296	24	3.5	24	80	3	96	49	15	14	20	1.79
1467203--1467308	48	2.2	48	83	8	128	49	15	16	19	1.80
1470166--1470223	23	2.5	23	86	5	73	22	27	24	25	2.00
1475138--1475193	25	2.2	26	83	3	69	42	1	14	41	1.56
1481864--1481910	20	2.6	17	76	20	51	38	4	0	57	1.18
1482253--1482330	38	2.1	38	95	2	140	38	38	11	11	1.78
1482201--1483051	248	3.4	251	88	6	1205	36	27	11	23	1.90
1482753--1482827	37	2.2	33	84	15	91	40	37	10	12	1.77
1484715--1484744	14	2.1	14	100	0	60	23	23	13	40	1.90
1488159--1488189	2	16.0	2	93	6	55	51	0	0	48	1.00
1488572--1488608	19	1.9	19	94	0	65	67	0	0	32	0.91
1488960--1488990	16	1.9	16	100	0	62	58	22	12	6	1.58
1489023--1489113	23	3.9	23	76	8	94	59	17	12	10	1.61
1489386--1489427	14	3.0	14	85	0	57	54	19	14	11	1.70
1489671--1489698	14	2.0	14	100	0	56	50	0	0	50	1.00
1491655--1491721	2	33.5	2	96	0	125	0	47	0	52	1.00
1495255--1495284	2	15.5	2	93	6	53	53	0	0	46	1.00
1501488--1501528	20	2.0	20	90	0	64	36	17	9	36	1.82
1505904--1506063	63	2.5	62	86	7	205	33	18	21	26	1.96
1506553--1506587	18	1.9	18	88	11	54	54	5	17	22	1.64
1506714--1506739	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1507489--1507796	149	2.1	144	91	6	489	26	17	22	34	1.96
1507764--1507808	23	2.0	23	90	0	72	22	26	26	24	2.00
1513487--1513530	23	1.9	23	95	0	79	27	22	20	29	1.99
1518603--1518644	14	3.2	14	74	19	54	38	0	4	57	1.20
1518604--1518646	13	3.4	13	78	15	54	41	0	4	53	1.21
1519772--1519935	67	2.5	64	83	8	188	34	17	20	26	1.95
1520788--1520853	2	33.0	2	100	0	132	50	0	0	50	1.00
1521396--1521701	149	2.1	148	91	0	495	26	16	21	35	1.94
1525052--1525151	45	2.2	44	87	7	139	38	17	17	28	1.91
1526592--1526905	149	2.1	148	91	1	504	26	16	21	35	1.95
1526873--1526917	23	2.0	23	90	0	72	22	26	26	24	2.00
1529829--1529874	20	2.3	20	84	0	65	32	10	17	39	1.84
1532044--1532253	103	2.0	103	94	0	366	26	13	24	35	1.92
1532273--1532340	23	3.0	22	80	4	73	22	26	25	26	2.00
1537136--1537505	183	2.0	185	92	1	618	29	22	18	29	1.97
1538484--1538549	14	4.6	14	76	10	62	46	27	0	25	1.53
1538547--1538584	14	2.7	14	88	8	51	34	2	23	39	1.69
1539022--1539054	16	2.1	16	100	0	66	57	24	12	6	1.57
1539120--1539194	10	7.7	10	69	21	61	57	21	12	9	1.62
1539124--1539188	16	4.1	16	95	0	121	56	23	12	7	1.61
1539938--1539993	14	4.3	14	80	17	66	53	25	12	8	1.67
1539918--1539992	24	3.1	24	88	3	98	56	21	10	12	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1558125--1558162	20	1.9	20	88	0	58	34	0	0	65	0.93
1565885--1565930	22	2.3	19	85	14	58	41	0	0	58	0.98
1565885--1565949	20	3.4	19	79	8	69	35	0	1	63	1.04
1567528--1567562	17	2.1	17	89	10	54	60	0	5	34	1.21
1570769--1570812	21	2.1	21	87	8	63	34	15	27	22	1.95
1571939--1572417	182	2.6	181	90	1	735	42	14	15	27	1.85
1574600--1574664	21	3.1	21	93	0	112	43	10	32	13	1.79
1574684--1574713	15	1.9	16	93	6	53	50	3	33	13	1.58
1574713--1574778	33	2.0	33	87	0	96	33	0	43	22	1.54
1577747--1577812	20	3.3	20	77	6	71	13	24	42	19	1.87
1580064--1580133	34	2.1	32	84	5	86	24	27	14	34	1.94
1580800--1581436	200	3.2	198	85	5	862	36	15	17	30	1.91
1582590--1582633	21	2.1	21	86	0	61	29	27	27	15	1.96
1582659--1582702	22	2.0	22	86	0	61	31	31	27	9	1.88
1583855--1583890	18	2.0	18	100	0	72	11	22	33	33	1.89
1583976--1584011	18	2.0	18	94	0	63	11	19	33	36	1.87
1583853--1584101	119	2.1	120	94	1	437	23	14	26	36	1.93
1584119--1584179	23	2.7	23	86	0	86	21	26	26	26	1.99
1584119--1584187	23	3.0	23	84	0	75	21	23	24	30	1.99
1587279--1587509	125	1.8	125	88	0	354	42	13	12	31	1.81
1587404--1588163	200	3.8	200	89	1	1119	37	12	15	34	1.85
1591358--1591827	195	2.4	193	82	6	528	40	14	15	29	1.86

Tables:   1   2   3   4   5   6   7   8

The End!