genome.fa.s8292.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008292.1 Hibiscus syriacus cultivar Beakdansim tig00110956_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1591938

Tables:   1   2   3   4   5   6   7   8   

This is table  1  of  8  ( 906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15652--15689	20	1.9	20	100	0	76	10	26	21	42	1.85
15782--15808	6	4.5	6	100	0	54	33	51	14	0	1.43
16361--16405	6	7.7	6	97	2	83	0	17	51	31	1.46
16469--16543	22	3.5	22	76	10	93	40	26	16	17	1.90
17146--17174	12	2.4	12	100	0	58	37	10	10	41	1.73
17900--17943	21	2.1	21	86	0	61	31	27	25	15	1.96
18448--18494	23	2.0	24	91	4	78	44	0	21	34	1.52
18672--18827	31	5.0	31	92	1	251	21	19	21	37	1.94
21793--21836	21	2.1	21	86	0	61	31	27	25	15	1.96
22350--22396	23	2.0	24	91	4	78	44	0	21	34	1.52
22574--22729	31	5.0	31	93	1	260	21	19	21	37	1.95
23749--23793	23	2.0	23	90	0	72	51	4	6	37	1.49
26883--26912	2	15.0	2	92	0	51	46	0	0	53	1.00
29525--29594	31	2.3	31	87	0	95	30	14	11	44	1.80
31733--31766	18	1.9	17	88	5	50	67	0	0	32	0.91
36011--36066	20	2.8	20	86	0	85	30	30	19	19	1.97
36009--36074	20	3.3	20	82	0	78	30	31	18	19	1.96
36318--36522	103	2.0	103	98	0	392	47	14	15	22	1.82
39096--39187	29	3.1	29	74	9	96	39	7	3	50	1.47
39109--39187	30	2.7	29	80	5	88	36	7	3	51	1.48
39398--39519	60	2.0	60	80	3	138	45	2	13	37	1.57
46250--46296	22	2.1	21	81	14	51	63	6	4	25	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46291--46325	10	3.5	10	92	0	52	80	0	0	20	0.72
46289--46327	12	3.5	11	86	6	53	82	0	0	17	0.68
51988--52022	2	18.0	2	94	5	63	48	0	0	51	1.00
52397--52459	2	31.5	2	100	0	126	49	0	0	50	1.00
53109--53167	22	2.6	21	82	12	73	33	3	1	61	1.23
56261--56321	30	2.0	30	90	6	97	42	11	4	40	1.62
58738--58822	21	3.9	22	74	15	70	14	24	37	23	1.92
62374--62413	21	1.9	21	85	10	55	35	10	2	52	1.48
64609--64669	30	2.0	30	90	6	97	42	11	4	40	1.62
67153--67199	19	2.5	18	83	10	67	68	0	6	25	1.13
70204--70247	17	2.6	17	88	0	61	50	0	6	43	1.29
70216--70256	17	2.4	17	100	0	82	43	0	12	43	1.41
76187--76229	21	2.0	21	81	0	50	30	30	25	13	1.94
76902--76946	23	2.0	23	86	0	63	20	26	26	26	1.99
82972--83014	21	2.0	21	81	0	50	30	30	25	13	1.94
83041--83078	20	1.9	20	88	0	58	23	34	31	10	1.89
83690--83734	23	2.0	23	86	0	63	20	26	26	26	1.99
93332--93385	24	2.2	24	81	9	65	35	0	3	61	1.14
94077--94120	21	2.1	21	91	8	72	27	0	20	52	1.47
99053--99119	3	23.0	3	78	6	75	65	0	0	34	0.93
100264--100302	19	2.1	18	85	4	51	58	2	0	38	1.12
101265--101312	19	2.5	19	96	0	87	29	18	31	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101925--101977	18	2.9	18	97	0	97	18	22	32	26	1.97
106307--106361	21	2.6	21	94	0	92	18	21	29	30	1.97
106353--106541	21	9.0	21	80	9	197	24	17	17	39	1.91
106353--106666	42	7.7	43	75	14	233	23	18	18	39	1.92
106355--106700	63	5.7	63	72	16	203	23	18	18	39	1.92
106507--106568	32	2.0	30	93	6	106	29	19	12	38	1.89
106465--106603	74	1.9	74	92	0	233	23	18	19	38	1.93
106423--106657	116	2.0	116	94	0	416	23	17	19	38	1.93
106539--106708	21	8.1	21	75	14	118	22	18	20	39	1.92
106574--106708	63	2.1	63	97	0	252	20	17	21	40	1.92
108835--108909	30	2.5	29	82	6	78	45	1	5	48	1.33
108879--108969	47	1.9	47	91	4	148	48	1	6	43	1.36
110286--110312	14	1.9	14	100	0	54	29	0	0	70	0.88
113286--113326	18	2.3	19	91	8	68	60	2	0	36	1.10
114248--114285	18	2.1	18	100	0	76	23	23	36	15	1.94
115994--116117	63	2.0	63	80	6	144	26	26	27	19	1.99
120073--120230	79	2.0	80	85	8	214	44	9	5	40	1.59
143128--143202	30	2.5	31	82	12	109	49	9	12	29	1.71
144929--144978	26	1.9	26	87	0	73	42	8	18	32	1.79
147922--147959	19	2.0	19	100	0	76	47	5	0	47	1.24
156459--156507	2	25.0	2	95	4	91	48	0	0	51	1.00
156633--156696	33	2.0	32	82	14	80	50	0	1	48	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156633--156692	29	2.0	30	87	9	88	50	0	1	48	1.11
173554--173644	20	4.7	20	80	11	73	30	24	12	32	1.91
173779--173816	16	2.5	15	84	12	51	28	5	0	65	1.14
174410--174443	12	2.8	12	90	0	50	55	29	0	14	1.40
177156--177200	20	2.2	20	88	0	72	26	24	20	28	1.99
177267--177434	64	2.6	64	91	1	257	54	16	2	27	1.54
178772--178870	21	4.7	21	71	15	71	26	17	31	25	1.97
179186--179260	21	3.6	21	68	12	55	30	37	12	20	1.89
179277--179326	21	2.4	21	86	0	73	32	30	14	24	1.94
181000--181050	20	2.5	20	96	0	93	47	23	19	9	1.79
181057--181132	20	3.8	20	87	1	100	9	18	19	52	1.72
181057--181132	39	1.9	40	94	2	136	9	18	19	52	1.72
181473--181530	22	2.6	22	80	0	80	17	12	43	27	1.84
182094--182166	28	2.6	28	86	0	101	41	23	5	30	1.77
182666--182722	22	2.7	21	86	7	80	19	38	14	28	1.90
182659--182722	21	3.0	21	84	6	85	18	39	17	25	1.92
183924--183959	17	2.1	17	100	0	72	44	11	19	25	1.83
184606--184763	79	2.0	79	87	2	228	22	10	18	48	1.78
186475--186541	33	2.0	33	94	0	116	50	13	7	28	1.68
186620--186677	28	2.1	28	100	0	116	46	20	10	22	1.81
188512--188622	54	2.1	54	100	0	222	32	12	9	45	1.75
189281--189314	17	2.0	17	100	0	68	52	5	11	29	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191837--191869	15	2.2	15	94	0	57	15	69	9	6	1.34
195101--195143	18	2.5	17	85	7	61	25	4	2	67	1.22
198240--198278	8	5.0	8	84	6	53	10	17	12	58	1.61
199414--199465	16	3.2	16	79	15	54	78	7	13	0	0.94
199421--199495	38	2.0	38	84	10	100	78	8	13	0	0.95
199455--199510	23	2.4	23	82	8	69	78	7	12	1	1.02
200149--200199	22	2.3	22	96	0	93	35	27	11	25	1.91
201060--201164	36	2.9	36	88	2	156	24	22	14	38	1.92
201060--201169	37	3.0	37	87	2	159	26	22	13	37	1.92
201153--201312	50	3.2	50	64	7	133	31	20	12	36	1.89
201078--201433	102	3.5	102	93	0	595	29	20	12	36	1.90
201196--201368	37	4.9	37	69	21	129	28	20	13	37	1.90
201339--201498	65	2.5	65	95	0	293	30	21	13	35	1.91
201216--201533	167	1.9	169	93	2	552	30	20	12	36	1.90
201061--201533	204	2.3	198	80	9	560	29	20	13	36	1.91
202280--202729	105	4.3	105	92	2	703	32	27	18	22	1.97
203836--203878	18	2.5	17	85	7	61	25	4	2	67	1.22
204042--204073	16	2.0	16	93	0	55	50	3	0	46	1.17
204131--204184	22	2.4	22	78	15	56	18	1	1	77	0.95
204368--204409	2	21.0	2	95	0	75	47	0	0	52	1.00
215756--215839	23	3.7	23	87	3	116	25	22	28	23	1.99
216441--216478	20	1.9	20	88	0	58	10	31	34	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221615--221680	27	2.4	27	94	0	114	37	15	18	28	1.91
221734--221771	15	2.5	15	91	0	58	31	23	7	36	1.84
237632--237676	2	22.5	2	100	0	90	51	0	0	48	1.00
238145--238213	23	3.0	23	82	0	93	18	21	26	33	1.97
252056--252235	83	2.1	85	91	4	294	43	7	8	40	1.64
252226--252310	37	2.3	36	76	17	84	47	1	3	48	1.26
253634--253672	20	2.1	19	90	9	62	35	15	25	23	1.94
253655--253824	79	2.2	79	97	1	324	40	17	18	23	1.91
254501--254647	21	6.9	21	75	3	141	23	14	25	36	1.93
254585--254654	23	3.1	23	74	15	74	22	12	25	38	1.90

Tables:   1   2   3   4   5   6   7   8