genome.fa.s8296.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008296.1 Hibiscus syriacus cultivar Beakdansim tig00110963_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1205179

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 780 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384478--384576	46	2.2	45	90	5	155	45	6	14	34	1.69
389124--389223	48	2.1	47	80	10	105	37	3	1	59	1.20
389131--389220	16	5.3	16	73	12	54	37	3	1	57	1.22
390622--390778	64	2.5	64	79	10	160	34	19	19	27	1.95
391888--392014	31	4.1	31	74	9	114	27	18	21	33	1.96
392002--392073	30	2.4	30	92	0	117	23	20	25	30	1.99
396448--396575	31	4.1	31	74	15	111	32	18	17	31	1.95
396448--396575	63	2.0	62	88	4	186	32	18	17	31	1.95
396563--396634	30	2.4	30	92	0	117	23	20	25	30	1.99
397272--397311	19	2.1	19	100	0	80	20	35	25	20	1.96
397374--397440	30	2.2	30	86	0	89	16	23	34	25	1.95
400095--400178	40	2.1	39	82	10	100	25	16	21	36	1.94
404702--404826	40	3.1	40	90	4	182	25	16	23	34	1.95
405281--405321	21	1.9	22	90	5	66	7	24	43	24	1.79
409864--409904	21	1.9	22	90	5	66	7	24	43	24	1.79
417462--417490	2	14.5	2	100	0	58	51	0	0	48	1.00
417959--418022	23	2.8	23	81	9	85	17	21	26	34	1.95
424365--424401	3	12.3	3	100	0	74	0	32	0	67	0.91
425818--425864	23	2.0	23	91	0	76	21	31	12	34	1.91
430998--431058	20	3.0	20	85	0	86	27	13	16	42	1.85
431018--431383	77	4.8	77	93	1	598	29	14	18	37	1.90
431095--431135	20	2.0	20	90	0	64	29	17	14	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430957--431135	97	1.8	97	93	0	313	29	13	17	38	1.89
431172--431211	20	2.0	20	95	0	71	25	12	20	42	1.86
431249--431289	20	2.0	20	100	0	82	24	17	19	39	1.92
434752--434801	15	3.3	15	91	0	73	62	6	2	30	1.31
434752--434801	6	8.3	6	86	0	64	62	6	2	30	1.31
434752--434801	9	5.6	9	90	0	64	62	6	2	30	1.31
435802--435850	20	2.4	22	76	10	59	22	20	16	40	1.91
438726--438949	111	2.0	112	94	2	398	26	16	21	35	1.95
445078--445111	16	2.1	16	88	5	50	35	14	5	44	1.70
446701--446740	14	3.1	13	82	10	55	60	0	0	40	0.97
447911--448013	44	2.3	44	98	0	197	17	18	49	14	1.80
447942--448024	16	5.4	16	71	11	66	18	16	53	12	1.73
448139--448260	3	41.0	3	84	1	129	56	0	1	41	1.09
448139--448260	27	4.6	27	92	3	185	56	0	1	41	1.09
448834--448880	24	2.0	23	84	12	60	14	21	6	57	1.60
448592--449268	113	6.0	112	90	1	1016	28	19	15	36	1.92
450040--450798	83	9.0	83	94	2	1263	37	22	14	26	1.92
450040--450798	250	3.0	250	94	2	1285	37	22	14	26	1.92
450040--450798	333	2.3	329	92	3	1257	37	22	14	26	1.92
453082--453110	10	2.9	10	100	0	58	0	10	0	89	0.48
456376--456429	14	3.8	14	85	2	63	51	9	14	24	1.71
458720--458759	14	3.1	13	82	10	55	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459975--460015	16	2.6	16	96	0	73	17	17	56	9	1.67
460132--460248	3	39.0	3	85	0	162	59	0	1	38	1.07
460132--460244	30	3.7	30	95	3	190	59	0	1	38	1.08
461099--461173	23	3.3	22	79	7	78	52	1	0	46	1.09
461147--461192	25	1.9	24	86	8	67	50	0	0	50	1.00
461961--462035	29	2.6	29	82	0	87	17	40	28	14	1.89
461991--462049	29	2.0	29	90	0	91	22	33	35	8	1.84
462266--462352	29	3.0	29	84	0	120	14	29	39	16	1.88
464244--464602	194	1.9	194	82	1	459	40	11	10	37	1.76
466595--466669	37	2.0	37	100	0	150	44	16	0	40	1.47
471048--471104	14	4.0	13	74	17	51	63	3	1	31	1.22
481344--481378	16	2.2	16	100	0	70	57	5	11	25	1.56
482367--482418	27	1.9	27	92	0	86	15	42	11	30	1.82
482367--482424	27	2.1	27	87	0	80	15	43	10	31	1.80
489820--489862	18	2.4	18	88	7	61	20	6	0	72	1.08
489891--489952	28	2.2	28	83	8	74	25	6	0	67	1.14
489907--489954	25	1.9	25	91	8	80	25	4	0	70	1.04
491090--491132	21	2.0	21	81	0	50	30	30	25	13	1.94
492730--492797	23	3.0	23	85	8	84	20	25	26	27	1.99
496362--496404	21	2.0	21	81	0	50	30	30	25	13	1.94
498002--498069	23	3.0	23	86	0	91	20	26	26	26	1.99
506301--506339	20	2.0	20	94	0	69	46	17	12	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508781--508824	21	2.1	21	83	8	54	29	13	18	38	1.89
509567--509600	17	1.9	17	88	5	50	38	0	0	61	0.96
509574--509616	19	2.2	20	80	12	54	32	0	0	67	0.91
509575--509621	15	3.1	16	76	20	55	31	0	0	68	0.90
510230--510272	20	2.1	21	86	4	61	46	2	0	51	1.13
511299--512016	228	3.1	229	96	0	1325	44	7	8	39	1.63
512065--512111	20	2.4	19	86	10	67	53	10	17	19	1.72
512246--512292	20	2.4	19	82	10	67	53	10	17	19	1.72
512255--512297	20	2.3	19	88	11	63	51	11	16	20	1.75
514512--514555	21	2.1	21	86	0	61	40	9	31	18	1.81
514589--514654	33	2.0	33	90	0	105	28	0	48	22	1.51
516428--516477	19	2.6	19	93	0	82	32	2	10	56	1.44
516595--517948	198	6.9	198	96	1	2433	35	15	17	31	1.92
519426--519470	3	15.0	3	85	0	63	37	2	33	26	1.69
520967--521457	183	2.7	182	95	1	856	34	14	17	33	1.90
523926--523985	25	2.4	25	88	0	84	33	8	15	43	1.76
524270--524316	21	2.2	22	81	11	62	40	12	10	36	1.78
524322--524397	23	3.5	22	78	15	68	39	5	19	35	1.75
524334--524397	23	2.8	23	87	0	92	37	4	20	37	1.74
524334--524406	23	3.2	23	82	7	85	35	4	20	39	1.72
524828--524864	18	2.1	18	89	0	56	32	5	10	51	1.60
525120--525206	39	2.2	39	91	0	147	48	19	13	18	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
525621--525693	23	3.2	23	88	0	101	34	4	21	39	1.73
526051--526123	23	3.2	23	84	0	92	35	4	20	39	1.72
526482--526554	23	3.2	23	88	0	101	34	4	21	39	1.73
525421--527752	426	5.5	428	96	1	4324	41	7	12	38	1.71
526557--526596	21	2.0	20	85	5	53	30	15	7	47	1.72
526908--526980	23	3.2	23	84	0	92	35	4	20	39	1.72
526984--527025	21	2.0	21	86	9	59	28	11	9	50	1.70
527336--527408	23	3.2	23	88	0	101	34	4	21	39	1.73
527411--527450	21	2.0	20	85	5	53	30	15	7	47	1.72
525421--527752	857	2.7	856	98	0	4462	41	7	12	38	1.71
527819--527866	23	2.1	23	92	0	78	35	14	10	39	1.80
528870--528908	19	2.1	19	85	4	53	61	0	0	38	0.96
531478--531522	23	2.0	23	90	0	72	33	4	0	62	1.15
537048--537213	91	1.8	90	82	10	212	28	17	24	30	1.97
537881--537961	41	2.1	38	84	11	101	53	4	9	32	1.56
539264--539313	20	2.6	19	83	3	64	38	6	16	40	1.73
539278--539321	20	2.2	20	83	0	52	38	13	11	36	1.81
541895--541979	22	4.3	21	71	23	78	37	1	1	60	1.12
541866--541930	11	5.5	11	73	20	51	43	1	1	53	1.19
541912--541974	16	4.0	16	75	15	60	39	0	1	58	1.07
541911--541991	18	4.8	16	76	15	74	37	0	1	61	1.04
550715--550744	14	2.2	14	94	5	53	26	20	13	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558026--558071	23	2.0	23	91	0	74	54	0	2	43	1.12
558216--558275	26	2.3	26	97	0	111	43	23	6	26	1.78
558626--558809	56	3.3	56	81	6	203	27	17	15	39	1.90
561763--561864	34	2.8	37	89	8	158	43	11	14	30	1.82
562430--562468	18	2.3	18	91	8	64	25	7	0	66	1.18
566348--566404	20	3.0	17	74	20	51	80	7	12	0	0.89
566350--566398	11	4.5	11	87	12	66	83	6	10	0	0.80
566356--566405	11	4.3	12	82	12	61	84	6	10	0	0.79
566341--566415	29	2.4	32	79	18	88	77	6	16	0	0.97
566350--566404	9	5.5	10	80	10	60	83	5	10	0	0.79

Tables:   1   2   3   4   5   6   7