Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008296.1 Hibiscus syriacus cultivar Beakdansim tig00110963_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1205179

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 780 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1162859--1162896
20
1.9
20
88
0
58
26
36
26
10
1.89
1166515--1166596
27
3.0
27
73
16
71
47
2
2
47
1.28
1166459--1166596
54
2.6
54
77
6
138
48
1
1
48
1.19
1166616--1166659
22
2.0
22
81
4
52
52
2
2
43
1.26
1171843--1171890
22
2.2
22
88
0
69
52
29
12
6
1.63
1171866--1171922
16
3.5
16
78
2
60
49
28
8
14
1.72
1171989--1172033
18
2.4
19
82
17
58
51
0
0
48
1.00
1172007--1172311
138
2.2
138
96
2
566
48
5
8
37
1.57
1172793--1172898
41
2.6
41
95
0
185
39
27
15
17
1.90
1173858--1173888
6
5.2
6
100
0
62
16
51
0
32
1.44
1173858--1173894
18
2.1
18
89
0
56
21
51
0
27
1.48
1180661--1180736
6
12.7
6
77
4
73
7
2
42
47
1.46
1180721--1180767
19
2.6
18
83
6
51
21
2
36
40
1.65
1181798--1181886
18
4.9
18
93
2
151
29
32
20
17
1.96
1181798--1181886
37
2.4
36
92
1
151
29
32
20
17
1.96
1182599--1182656
20
2.7
20
86
10
71
24
22
24
29
1.99
1183203--1183234
3
11.0
3
93
6
57
65
34
0
0
0.93
1189487--1189556
2
35.0
2
100
0
140
50
0
0
50
1.00
1189791--1189858
18
3.8
18
90
0
109
27
30
22
19
1.97
1190569--1190626
20
2.7
20
86
10
71
24
22
24
29
1.99
1190677--1190728
19
2.7
19
93
0
86
25
30
17
26
1.97
1193111--1193231
27
4.7
24
75
15
91
47
0
1
49
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1193119--1193269
6
24.7
6
67
20
66
49
1
1
47
1.21
1193134--1193194
17
3.6
17
81
16
58
50
0
0
49
1.00
1193107--1193207
45
2.3
42
77
11
105
50
0
0
48
1.07
1193225--1193286
31
2.0
31
90
0
97
53
3
1
41
1.27
1193231--1193277
24
1.9
25
82
4
60
55
4
2
38
1.31
1193362--1193404
18
2.5
18
85
14
56
48
6
2
41
1.43
1193424--1193501
36
2.2
35
86
2
102
43
7
6
42
1.59
1193700--1193748
24
2.1
23
84
3
62
44
6
8
40
1.59
1193717--1193785
34
2.0
36
85
5
97
39
8
7
44
1.63
1193617--1193821
56
3.6
53
74
15
146
40
8
8
41
1.66
1194047--1194083
15
2.4
15
95
4
65
40
2
5
51
1.39
1194056--1194099
20
2.2
20
88
4
63
40
9
4
45
1.56
1193732--1194325
318
1.9
317
93
1
1037
37
8
8
45
1.66
1194326--1194627
2
156.0
2
68
21
146
45
3
2
48
1.32
1193718--1194382
318
2.1
316
88
4
1025
38
7
7
45
1.63
1194444--1194585
15
10.3
15
74
19
78
42
4
3
49
1.39
1194428--1194618
95
2.0
94
84
9
244
44
4
2
48
1.37
1194598--1194637
18
2.2
19
86
13
57
50
0
2
47
1.14
1194444--1194652
108
1.9
109
77
16
211
44
4
3
47
1.39
1194625--1194659
18
2.0
18
94
5
63
48
5
5
40
1.51
1194807--1194870
2
34.5
2
74
14
57
45
3
0
51
1.17
1194807--1194869
7
8.9
7
81
8
74
44
3
0
52
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1194888--1194922
11
3.2
11
87
0
52
51
14
2
31
1.57
1195449--1195500
18
3.2
17
84
10
56
48
1
3
46
1.31
1195491--1195515
11
2.3
11
100
0
50
40
0
8
52
1.31
1195499--1195553
21
2.7
19
79
20
58
45
3
1
49
1.30
1195667--1195723
2
30.5
2
74
13
50
45
3
0
50
1.18
1195667--1195723
22
2.5
22
86
8
71
45
3
0
50
1.18
1195667--1195722
7
7.9
7
78
9
60
44
3
0
51
1.18
1195741--1195775
11
3.2
11
87
0
52
51
14
2
31
1.57
1196263--1196295
13
2.5
13
90
0
57
42
3
6
48
1.43
1196308--1196360
18
3.0
17
81
13
54
49
1
3
45
1.31
1196351--1196375
11
2.3
11
100
0
50
40
0
8
52
1.31
1196273--1196410
71
2.0
69
81
12
165
46
4
2
46
1.37
1196359--1196413
21
2.7
19
79
20
58
45
3
1
49
1.30
1196527--1196673
2
76.5
2
88
7
225
48
0
0
49
1.10
1194509--1196591
853
2.4
860
95
3
3794
36
8
5
50
1.54
1199507--1199842
6
57.2
6
89
8
496
2
16
49
31
1.58

Tables:   1   2   3   4   5   6   7

The End!