genome.fa.s8308.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008308.1 Hibiscus syriacus cultivar Beakdansim tig00110998_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1044366

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 552 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240116--240360	74	3.3	72	76	5	224	36	19	22	22	1.95
243170--243279	37	2.9	38	78	14	113	40	21	19	18	1.91
243297--243575	74	3.8	74	81	4	312	32	19	24	23	1.97
243634--244254	200	3.1	199	79	4	640	36	20	16	26	1.94
245234--245258	10	2.5	10	100	0	50	0	28	0	72	0.86
245231--245259	13	2.1	14	93	6	51	0	27	0	72	0.85
245364--245407	19	2.4	18	85	7	61	9	4	0	86	0.70
245365--245406	14	2.8	15	85	7	50	9	4	0	85	0.72
246113--246295	92	2.0	93	91	6	304	21	7	13	57	1.60
246821--246874	3	19.0	3	81	11	69	37	0	0	62	0.95
246811--246874	22	2.9	22	86	11	78	34	0	1	64	1.03
246820--246870	17	3.1	17	82	5	68	35	0	0	64	0.94
246824--246872	14	3.5	14	78	16	57	36	0	0	63	0.95
246821--246881	22	2.7	23	82	7	81	40	0	0	59	0.98
248310--248371	25	2.3	27	81	15	67	38	1	1	58	1.18
249027--249059	15	2.2	15	94	0	57	24	0	0	75	0.80
252314--252345	15	2.1	15	100	0	64	31	18	0	50	1.48
261298--261882	113	5.0	113	82	10	541	38	14	19	27	1.90
261543--261880	124	2.7	122	90	4	523	39	13	19	26	1.89
262103--262143	3	14.0	3	84	5	57	34	0	0	65	0.93
262093--262142	23	2.2	22	89	3	73	30	0	2	68	1.01
263037--263137	8	14.1	8	71	22	91	24	15	36	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263037--263154	28	4.2	28	97	0	218	25	16	35	22	1.94
263037--263129	20	4.8	20	70	19	81	24	16	36	22	1.94
263065--263154	20	4.7	20	70	20	75	25	16	35	22	1.95
263059--263210	20	8.1	20	66	18	51	25	17	30	26	1.97
263322--263384	30	2.1	29	85	11	83	49	12	6	31	1.66
263333--263391	30	2.0	29	93	3	100	44	13	6	35	1.71
265172--265200	13	2.1	14	93	6	51	6	34	0	58	1.25
266603--266693	20	4.9	19	71	15	57	24	16	29	29	1.96
266805--266867	30	2.1	29	85	11	83	49	12	6	31	1.66
266816--266874	30	2.0	29	93	3	100	44	13	6	35	1.71
268184--268217	17	2.0	17	88	11	52	50	0	0	50	1.00
272145--272191	21	2.2	22	84	3	60	61	2	0	36	1.08
272664--272714	22	2.2	21	80	16	57	52	5	1	39	1.37
275046--275080	15	2.3	15	90	0	52	45	2	45	5	1.41
280138--280180	2	22.0	2	95	4	79	51	0	0	48	1.00
284924--284955	15	2.1	15	94	0	55	9	21	46	21	1.79
285076--285148	20	3.5	20	67	29	55	38	2	2	56	1.28
300021--300076	20	2.8	21	78	10	55	28	14	30	26	1.95
302026--302070	16	2.8	16	96	0	81	13	0	24	62	1.31
304472--304550	31	2.5	31	78	11	90	30	13	15	40	1.86
307446--307497	19	2.7	20	85	8	63	21	1	7	69	1.24
311999--312119	64	1.9	63	86	1	170	36	22	17	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320077--320113	19	2.0	18	89	5	56	18	16	5	59	1.55
322401--322428	2	14.0	2	100	0	56	50	0	0	50	1.00
324188--324217	2	15.0	2	100	0	60	50	0	0	50	1.00
324499--324565	34	2.0	34	96	0	125	17	16	17	47	1.83
324804--325022	111	2.0	111	90	1	350	26	27	22	23	2.00
340266--340308	21	2.0	21	90	0	68	32	27	23	16	1.96
341642--341856	103	2.1	103	94	0	376	27	12	23	36	1.91
341876--341944	23	3.0	23	82	4	75	20	26	26	27	1.99
341883--341944	24	2.6	24	84	2	72	19	25	25	29	1.99
345455--345497	21	2.0	21	86	0	59	30	27	25	16	1.97
345526--345570	22	2.0	22	91	4	72	28	33	26	11	1.91
348701--348734	17	2.0	17	100	0	68	17	41	11	29	1.85
349770--349820	17	3.1	17	94	5	88	60	0	33	5	1.21
354377--354406	3	10.3	3	92	7	53	70	0	0	30	0.88
355107--355164	28	2.1	27	81	15	66	37	15	17	29	1.90
355045--355238	64	3.0	63	82	8	203	39	14	19	27	1.90
356591--356691	7	14.1	7	69	19	57	2	14	3	78	1.02
356589--356656	28	2.4	28	79	18	79	4	13	4	77	1.06
356624--356690	17	3.9	17	73	19	59	2	16	4	76	1.08
356636--356689	19	2.8	19	81	13	65	1	18	3	75	1.03
356592--356692	51	2.0	50	84	5	132	2	14	4	77	1.06
356619--356698	12	6.3	12	80	15	58	2	15	5	77	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361454--361479	13	2.0	13	100	0	52	0	23	0	76	0.78
362068--362144	3	25.7	3	100	0	154	67	0	0	32	0.91
371724--371770	17	2.7	17	86	3	58	70	0	6	23	1.10
371711--371752	17	2.5	17	100	0	84	64	0	4	30	1.14
372829--372877	21	2.3	21	89	0	71	30	28	16	24	1.96
372997--373047	21	2.4	21	90	0	75	31	23	9	35	1.87
373547--373628	41	2.0	41	86	9	114	30	30	12	26	1.92
379621--379722	21	4.8	22	73	15	81	30	25	19	24	1.98
379841--379891	21	2.4	21	90	0	75	31	23	9	35	1.87
380196--380269	22	3.5	22	85	3	98	33	27	14	24	1.94
380255--380396	54	2.6	54	83	8	164	29	24	16	28	1.97
380365--380466	20	5.0	21	68	16	61	30	27	14	27	1.95
380408--380459	20	2.5	20	93	3	86	32	23	17	26	1.96
381359--381416	29	2.0	29	83	12	75	48	3	20	27	1.66
385830--385870	21	2.0	21	90	0	64	63	0	21	14	1.30
393521--393563	20	2.2	20	86	0	59	34	16	13	34	1.88
396887--396921	14	2.5	14	90	0	52	20	5	2	71	1.19
407494--407536	17	2.4	18	85	14	63	83	2	9	4	0.87
407576--407605	6	4.8	6	92	8	51	83	0	16	0	0.65
407576--407605	13	2.4	12	89	10	51	83	0	16	0	0.65
408437--408667	118	2.0	118	88	1	347	35	24	16	23	1.95
408625--408767	58	2.5	58	90	0	223	33	23	15	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408507--408888	182	2.2	173	84	7	475	34	24	16	24	1.95
408684--408915	121	1.9	124	86	4	337	36	24	15	24	1.93
410893--410950	11	5.1	12	78	15	61	27	0	0	72	0.85
410893--410956	10	6.2	10	76	18	60	26	0	0	73	0.84
410899--410947	24	2.1	22	92	7	80	24	0	0	75	0.80
413067--413114	19	2.5	20	93	3	80	54	2	6	37	1.38
414012--414370	186	1.9	187	80	6	424	37	12	7	41	1.72
415879--415935	21	2.5	22	83	11	80	57	0	7	35	1.26
417383--417451	21	3.3	21	91	0	120	11	47	11	28	1.75
422790--422858	26	2.7	26	83	0	84	39	21	5	33	1.77
424858--424914	29	1.9	30	82	3	71	43	8	17	29	1.79
438859--438960	23	4.4	23	74	10	84	16	21	23	38	1.93
438859--438957	45	2.1	47	87	7	141	17	22	22	38	1.93
440044--440074	13	2.4	13	100	0	62	35	0	41	22	1.54
445645--445697	15	3.5	15	76	16	56	32	5	22	39	1.78
445802--445846	23	2.0	23	86	0	63	20	20	24	35	1.96
445866--445911	24	1.9	24	95	0	83	15	28	26	30	1.96
446477--446507	16	1.9	16	93	0	53	45	6	16	32	1.72
448728--448753	2	13.0	2	100	0	52	0	50	0	50	1.00
452324--452459	24	5.9	23	64	20	68	31	1	11	55	1.43
452278--452465	92	2.0	92	100	0	376	31	2	9	56	1.43
452961--452994	17	2.0	17	88	0	50	23	0	2	73	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458192--458276	30	2.8	29	70	7	80	65	1	8	24	1.27
458303--458332	15	1.9	16	93	6	53	76	3	6	13	1.11
458281--458349	33	2.1	32	82	12	79	69	2	13	14	1.30
458401--458443	18	2.4	18	88	0	59	72	0	4	23	1.04
458949--459011	24	2.6	24	97	0	117	55	15	0	28	1.41
459308--459693	202	1.9	202	86	1	549	26	20	18	33	1.96
460437--460512	32	2.4	32	84	0	89	35	22	14	27	1.93
461687--461728	2	21.0	2	85	0	57	47	4	2	45	1.36
461679--461728	16	3.1	16	91	0	73	48	8	2	42	1.44
461679--461716	20	1.9	20	94	0	67	50	10	0	39	1.37

Tables:   1   2   3   4   5