genome.fa.s8308.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008308.1 Hibiscus syriacus cultivar Beakdansim tig00110998_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1044366

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 552 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951087--951221	19	7.6	19	76	16	128	45	23	19	11	1.82
951217--951345	19	7.3	19	75	17	125	8	17	28	45	1.77
951217--951308	33	2.8	33	93	3	150	7	18	28	45	1.76
951389--951862	93	5.1	93	98	0	921	45	18	12	22	1.83
953568--953657	14	5.7	14	74	23	81	42	23	25	8	1.83
953560--953674	33	3.5	33	95	0	212	45	20	24	9	1.81
953567--953679	19	6.8	18	72	23	88	43	22	24	9	1.83
953691--953744	14	3.5	14	73	22	54	7	25	24	42	1.80
953675--953755	33	2.5	33	93	0	135	7	23	22	46	1.76
953731--953808	41	1.9	41	94	0	138	11	26	16	44	1.82
953732--953807	21	3.7	21	82	3	100	10	26	17	46	1.80
953887--953957	33	2.2	33	89	0	106	47	16	23	11	1.79
954137--954191	22	2.5	22	81	0	74	20	16	40	23	1.91
954337--954530	20	9.6	20	82	5	221	19	19	25	35	1.95
954337--954530	60	3.2	60	83	0	253	19	19	25	35	1.95
954517--954599	21	4.0	21	71	6	69	25	15	24	34	1.95
955116--955197	30	2.7	30	80	12	80	50	1	1	47	1.16
955116--955184	30	2.3	31	82	9	81	49	1	0	49	1.09
955619--955663	23	2.0	23	86	0	63	40	15	11	33	1.83
955516--955747	87	2.7	86	87	0	347	32	13	10	42	1.79
955619--955914	156	1.9	156	93	0	511	33	16	10	39	1.82
955697--955816	23	5.2	23	91	0	186	34	19	9	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
955853--955914	23	2.7	23	92	0	97	33	20	6	38	1.79
957323--957369	22	2.1	23	84	4	60	63	10	4	21	1.43
961984--962034	19	2.7	19	93	0	93	27	21	27	23	1.99
964875--964953	22	3.6	22	69	16	65	29	20	20	30	1.97
964855--964969	43	2.7	43	90	1	178	28	19	20	31	1.97
964852--964968	20	5.6	20	68	13	74	28	18	21	31	1.97
970726--970776	19	2.7	19	96	0	93	29	21	27	21	1.99
973063--973108	16	2.8	16	86	6	56	50	2	2	45	1.26
973586--973643	3	19.3	3	92	0	98	31	1	1	65	1.13
976284--976344	22	2.7	23	80	10	63	49	6	3	40	1.45
979575--979654	26	3.3	25	70	19	80	25	25	10	40	1.86
980261--980299	11	3.6	11	89	3	53	69	12	12	5	1.35
981462--981536	12	5.6	12	70	22	51	46	26	0	26	1.53
981461--981536	16	5.2	16	75	23	87	47	26	0	26	1.52
981461--981536	28	2.7	28	97	0	143	47	26	0	26	1.52
981474--981524	4	13.8	4	76	15	56	47	23	0	29	1.52
982007--982230	103	2.2	101	83	7	276	28	19	12	39	1.88
982198--982295	36	2.8	35	78	6	101	36	18	12	32	1.88
982536--982862	29	11.0	29	71	17	201	27	11	13	47	1.77
982514--982862	149	2.4	148	91	2	540	26	11	14	47	1.78
982784--982905	37	3.5	36	73	16	123	31	11	10	45	1.74
982759--982909	67	2.3	65	90	6	243	29	11	10	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
982758--982983	67	3.5	65	83	7	210	28	11	11	47	1.75
983148--983299	63	2.4	63	80	9	186	32	11	12	43	1.78
983265--983330	31	2.1	31	88	0	96	39	10	12	37	1.77
983343--983422	40	2.0	40	95	0	142	31	21	11	36	1.88
983666--983783	63	1.9	62	84	11	161	27	17	13	41	1.87
983800--983881	28	2.9	28	80	10	96	21	12	15	50	1.77
983910--984364	40	10.8	40	70	17	235	24	31	18	25	1.97
983889--984303	128	3.2	128	96	0	699	24	32	18	25	1.97
984032--984187	88	1.8	82	86	8	222	23	32	19	25	1.98
983910--984359	128	3.5	128	93	1	697	24	31	18	25	1.97
984557--984622	3	22.3	3	90	3	107	31	1	1	65	1.11
987274--987333	24	2.7	23	79	7	61	48	6	3	41	1.46
990239--990302	31	2.1	31	94	2	112	34	17	28	20	1.95
992323--992387	31	2.1	31	85	0	85	24	24	13	36	1.92
1016561--1016788	117	1.9	117	92	1	386	46	10	13	29	1.75
1018267--1018302	7	5.1	7	96	0	63	13	11	47	27	1.77
1018939--1019005	30	2.2	29	76	10	71	22	23	2	50	1.62
1025929--1025968	20	2.0	20	90	0	62	22	32	25	20	1.98
1025929--1025989	23	2.9	21	85	7	70	22	32	26	18	1.97
1025972--1026009	20	1.9	20	88	0	58	26	36	26	10	1.89
1027899--1027949	9	6.2	8	76	19	52	13	0	27	58	1.36
1027901--1027944	17	2.6	17	85	7	63	13	0	29	56	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1028522--1028724	74	2.8	74	84	3	241	24	30	23	22	1.99
1035108--1035179	2	36.0	2	100	0	144	50	0	0	50	1.00
1039462--1039615	43	3.5	43	71	15	145	36	18	20	24	1.95
1039905--1039938	13	2.5	14	90	9	61	47	0	0	52	1.00
1041306--1041346	21	1.9	22	85	5	57	41	0	2	56	1.13
1043166--1043223	14	3.5	15	75	24	55	67	1	1	29	1.11

Tables:   1   2   3   4   5

The End!