genome.fa.s8336.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008336.1 Hibiscus syriacus cultivar Beakdansim tig00111053_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  846240

Tables:   1   2   3   4   

This is table  2  of  4  ( 379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266530--266562	6	5.5	6	96	0	57	36	36	27	0	1.57
267877--267933	19	2.9	19	72	12	53	45	1	0	52	1.11
282394--282437	20	2.4	19	78	14	56	36	0	0	63	0.95
283855--283940	45	1.9	45	92	0	145	37	16	17	29	1.91
284166--284218	24	2.3	24	87	6	74	35	3	1	58	1.27
284137--284233	23	4.3	22	75	14	74	35	4	1	59	1.23
284735--284789	2	28.0	2	96	3	103	49	0	0	50	1.00
285375--285436	23	2.7	23	89	0	88	25	14	33	25	1.94
285845--285882	15	2.6	15	87	4	51	34	0	2	63	1.09
288518--288559	19	2.2	20	82	4	50	26	4	2	66	1.23
292250--292289	21	1.9	21	94	0	71	17	25	22	35	1.95
294535--294579	21	2.1	21	100	0	90	33	26	15	24	1.95
296650--296695	24	1.9	25	83	16	62	52	2	0	45	1.13
296752--296804	2	26.5	2	100	0	106	49	0	0	50	1.00
296914--296976	32	1.9	33	87	6	92	41	1	19	38	1.61
297276--297444	2	85.5	2	68	15	66	41	5	7	45	1.55
297279--297355	16	4.6	16	78	12	82	41	9	1	48	1.43
297397--297450	12	4.2	13	79	13	58	46	0	7	46	1.31
297380--297510	20	6.2	22	72	20	86	43	4	9	41	1.58
297711--297845	70	1.9	69	89	1	207	33	10	7	48	1.65
301752--301785	2	17.0	2	100	0	68	50	0	0	50	1.00
303585--303626	2	21.0	2	100	0	84	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310125--310170	24	1.9	25	83	16	62	52	2	0	45	1.13
310722--310818	16	5.6	16	75	17	86	40	9	1	49	1.42
310715--310892	2	89.5	2	68	15	66	40	6	6	46	1.55
310843--310974	20	6.2	22	69	21	77	43	4	9	41	1.58
310965--311022	23	2.4	25	80	11	68	41	13	1	43	1.55
311014--311048	2	18.0	2	94	5	63	51	0	0	48	1.00
311688--311746	27	2.2	27	100	0	118	37	25	11	25	1.90
315922--315973	23	2.3	22	75	15	52	11	25	13	50	1.75
316639--316954	41	7.7	41	75	6	219	29	14	16	38	1.89
316680--316953	83	3.3	83	76	7	263	29	14	16	39	1.88
316621--316948	124	2.7	124	78	4	299	30	15	16	37	1.90
316843--316983	42	3.4	40	75	8	122	31	15	14	37	1.88
316856--316983	41	3.1	40	76	8	123	32	14	15	37	1.88
322038--322152	24	4.8	24	86	2	142	27	12	18	41	1.86
322114--322158	12	3.8	12	77	11	56	26	11	17	44	1.82
323019--323143	65	1.9	65	100	0	250	35	29	7	28	1.84
323894--323979	45	1.9	45	92	0	145	50	11	4	33	1.60
328042--328179	42	3.3	41	67	23	108	40	15	12	31	1.85
328032--328172	44	3.3	43	65	24	109	40	14	12	32	1.83
328022--328217	83	2.4	84	90	1	315	38	17	13	30	1.88
328084--328213	42	3.1	42	68	13	115	40	14	13	30	1.85
330266--330321	2	28.0	2	100	0	112	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
334050--334276	57	4.0	56	88	2	319	34	29	20	15	1.94
334335--334395	24	2.5	24	78	5	61	39	19	14	26	1.90
336145--336180	18	1.9	19	94	5	65	55	0	0	44	0.99
336397--336421	11	2.3	11	100	0	50	32	8	24	36	1.84
336787--336833	20	2.4	19	82	10	67	53	10	17	19	1.72
336575--337048	182	2.6	183	91	1	729	42	13	17	26	1.86
336957--337015	20	3.0	19	80	9	73	57	8	13	20	1.62
339238--339297	21	2.9	21	92	0	93	41	11	28	18	1.85
339334--339399	33	2.0	33	90	0	105	28	0	48	22	1.51
341191--341239	19	2.6	19	96	0	89	32	2	10	55	1.45
341473--342236	200	3.8	200	95	0	1350	35	15	18	30	1.92
343006--343576	183	3.1	183	95	0	989	34	14	16	33	1.90
346924--347086	87	1.9	87	94	2	292	33	14	10	42	1.79
347008--347052	23	2.0	23	86	0	63	37	15	8	37	1.79
347999--348028	14	2.1	14	93	0	51	23	26	6	43	1.78
349009--349091	34	2.5	34	98	2	159	25	13	9	51	1.70
349301--349422	36	3.4	36	95	1	219	38	11	16	33	1.84
353291--353319	15	1.9	15	100	0	58	55	3	0	41	1.17
353461--353524	14	4.1	14	75	21	65	21	7	25	45	1.78
356660--356712	20	2.5	21	82	14	65	32	26	22	18	1.97
356676--356713	20	2.0	20	94	5	69	31	23	23	21	1.98
357502--357532	16	1.9	16	100	0	62	35	19	25	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361499--361925	106	4.0	106	87	3	603	22	18	22	36	1.95
362732--362808	36	2.1	38	90	4	122	37	15	22	24	1.93
363266--363301	18	2.0	18	88	0	54	44	30	8	16	1.77
364373--364427	9	5.8	9	78	18	58	1	12	3	81	0.89
364363--364427	18	3.5	18	79	8	76	1	13	4	80	0.95
376722--376750	4	7.2	4	100	0	58	75	0	0	24	0.80
377835--377874	2	20.5	2	94	5	73	50	0	0	50	1.00
378894--378955	24	2.6	24	86	0	88	12	11	22	53	1.71
380467--380521	16	3.4	16	92	0	92	9	10	21	58	1.60
381942--382008	32	2.1	33	85	2	91	56	5	14	22	1.60
385637--385677	3	14.0	3	87	5	57	36	0	2	60	1.10
391910--392337	209	2.0	213	91	3	702	30	18	19	30	1.96
395624--395838	110	2.0	110	94	0	376	22	15	16	45	1.85
404817--404875	26	2.4	25	82	5	75	47	1	13	37	1.53
409760--409804	21	2.2	21	96	4	83	35	0	4	60	1.17
412134--412217	42	2.0	42	95	2	152	36	8	8	46	1.64
416719--416784	31	2.1	31	86	5	89	37	12	24	25	1.90
417215--417272	29	2.0	29	96	0	107	25	24	12	37	1.90
426527--426568	22	2.0	21	86	13	59	64	7	0	28	1.20
437884--437928	20	2.1	22	92	8	76	35	8	2	53	1.45
439411--439457	2	23.5	2	100	0	94	48	0	0	51	1.00
439740--439778	3	13.0	3	100	0	78	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443907--443954	24	2.0	23	84	4	60	6	43	12	37	1.68
444174--444216	18	2.4	18	100	0	86	20	18	11	48	1.79
444725--444910	21	9.0	21	70	15	136	22	20	22	35	1.96
444725--444910	42	4.5	42	93	1	313	22	20	22	35	1.96
444994--445025	6	5.5	6	96	3	57	31	53	15	0	1.43
445773--446088	21	15.3	19	78	12	245	34	23	20	21	1.97
445773--446096	42	7.8	42	83	7	430	34	23	20	21	1.96
445773--446088	82	3.8	82	93	1	506	34	23	20	21	1.97
446092--446144	21	2.5	21	93	0	88	16	20	32	30	1.95
453228--453315	32	2.8	32	77	6	97	21	25	26	27	1.99
455325--455444	64	1.9	64	89	0	186	35	14	12	38	1.83
455903--455947	23	2.0	23	90	0	72	40	17	20	22	1.92
458153--458205	27	2.0	27	92	0	88	28	9	16	45	1.79
462472--462556	33	2.7	32	85	5	102	57	5	11	24	1.56
463170--463249	40	1.9	41	87	7	117	38	10	13	37	1.79
463280--463311	14	2.1	16	88	11	50	15	15	18	50	1.79
463659--463691	16	2.1	16	94	0	57	9	12	21	57	1.62
464206--464259	25	2.1	25	82	3	63	55	14	3	25	1.56
465162--465205	7	6.4	7	94	5	72	63	0	0	36	0.95
492582--492624	23	1.9	22	81	13	52	30	13	9	46	1.75
499344--499391	19	2.5	19	100	0	96	27	22	29	20	1.99
500307--500730	103	4.1	103	98	0	805	25	13	23	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500746--500835	23	3.9	23	89	0	117	24	24	23	27	2.00
506165--506482	102	3.1	102	95	1	550	27	12	23	36	1.92
506498--506587	23	3.9	23	95	0	153	22	23	25	28	1.99
512179--512236	21	2.8	21	86	5	73	27	27	20	24	1.99
516285--516356	30	2.4	30	92	0	126	34	13	11	40	1.81
516819--516877	19	3.1	19	90	2	82	40	3	40	15	1.64
517510--517540	2	15.5	2	100	0	62	51	0	0	48	1.00
525852--525894	15	2.9	15	100	0	86	11	67	13	6	1.41
526590--526618	11	2.6	11	100	0	58	13	10	20	55	1.68
527961--528007	3	15.7	3	81	0	58	34	4	2	59	1.29

Tables:   1   2   3   4