Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008336.1 Hibiscus syriacus cultivar Beakdansim tig00111053_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  846240

Tables:   1   2   3   4   

This is table  4  of  4  ( 379 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
810564--810603
21
1.9
21
89
0
62
45
27
5
22
1.73
811220--811273
3
17.7
3
88
11
83
33
0
0
66
0.92
811323--811391
33
2.1
33
91
5
113
43
20
10
26
1.83
811766--811792
2
13.5
2
100
0
54
48
0
0
51
1.00
824978--825015
12
3.1
12
82
17
51
39
0
0
60
0.97
829182--829242
24
2.5
24
97
0
113
27
22
16
32
1.96
830752--830811
32
1.9
32
93
3
104
35
6
23
35
1.81
832429--832501
20
3.6
19
77
14
65
28
21
26
23
1.99
833252--833324
30
2.4
30
90
0
119
27
19
21
31
1.97
837691--837835
64
2.3
66
80
4
172
33
22
20
24
1.97
837801--837875
20
3.7
19
79
13
78
29
21
25
24
1.99
838626--838728
30
3.4
30
93
0
170
25
19
23
32
1.98
840660--840799
28
4.9
28
70
16
97
29
5
17
47
1.71
840659--840835
88
2.0
88
96
0
327
29
6
19
44
1.75
840680--840858
88
2.0
88
82
2
214
32
6
20
40
1.77
840926--840955
12
2.5
12
100
0
60
30
0
0
70
0.88
842638--842683
20
2.3
19
85
14
58
50
8
15
26
1.73
845540--845578
12
3.2
12
82
13
53
20
15
35
28
1.93
845540--845586
24
2.0
24
83
8
60
23
14
36
25
1.93

Tables:   1   2   3   4

The End!