genome.fa.s8372.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008372.1 Hibiscus syriacus cultivar Beakdansim tig00111128_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1214897

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 660 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1064983--1065016	14	2.4	14	100	0	68	61	8	23	5	1.47
1065526--1066999	84	17.5	84	87	0	1822	23	17	22	35	1.95
1071707--1072524	410	2.0	410	98	0	1573	29	20	24	25	1.99
1077098--1077133	15	2.4	15	90	9	56	22	8	0	69	1.15
1085926--1085986	28	2.2	28	82	8	72	67	3	24	4	1.26
1086064--1086100	8	4.6	8	90	9	58	62	0	24	13	1.31
1087508--1087551	22	2.0	22	86	8	63	29	29	4	36	1.77
1091307--1091409	36	2.9	36	97	0	188	23	18	17	40	1.91
1095742--1095775	17	2.1	16	88	5	50	14	8	0	76	1.01
1102076--1102118	20	2.1	21	87	8	63	18	13	0	67	1.23
1102075--1102124	20	2.5	20	75	15	59	18	18	0	64	1.30
1105270--1105303	17	2.1	16	88	5	50	14	8	0	76	1.01
1108028--1108070	20	2.2	20	86	0	59	37	18	11	32	1.87
1110891--1110943	21	2.8	20	83	13	67	71	3	13	11	1.26
1110996--1111032	15	2.5	15	91	4	58	81	2	0	16	0.81
1113769--1113836	17	3.9	17	80	5	66	36	14	8	39	1.78
1122290--1122326	2	19.0	2	94	5	67	48	0	0	51	1.00
1123312--1123401	41	2.2	41	78	13	96	45	5	1	47	1.33
1123513--1123582	28	2.5	28	81	11	81	48	1	1	48	1.19
1128578--1128630	26	2.0	26	100	0	106	58	18	7	15	1.60
1132570--1132651	36	2.3	36	97	0	155	46	17	15	20	1.84
1134164--1134269	39	2.7	39	78	9	101	34	21	19	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1134819--1134854	17	2.2	16	90	5	54	63	0	0	36	0.94
1135455--1135496	20	2.0	22	86	9	61	69	7	0	23	1.13
1136083--1136119	20	1.9	19	89	10	58	45	10	24	18	1.81
1136805--1136857	21	2.5	22	72	9	56	22	18	13	45	1.84
1139217--1139312	38	2.5	38	89	0	147	23	28	21	26	1.99
1139461--1139565	46	2.3	46	90	1	158	32	17	7	42	1.77
1146096--1146139	17	2.6	17	96	0	79	27	34	22	15	1.95
1146329--1146403	23	3.3	22	70	15	62	33	18	6	41	1.77
1146321--1146421	46	2.2	46	92	0	166	33	16	4	44	1.70
1154779--1154902	62	2.0	63	95	1	223	21	12	10	54	1.68
1155482--1155533	17	3.2	17	75	10	54	51	13	1	32	1.52
1159844--1159896	21	2.5	21	81	6	72	20	26	18	33	1.96
1159886--1160000	21	5.5	21	94	1	187	38	16	23	21	1.93
1159989--1160103	20	5.7	20	83	6	133	32	26	18	22	1.97
1159986--1160117	41	3.2	41	84	6	178	35	25	16	21	1.95
1160596--1160654	20	3.0	20	85	5	66	15	20	22	42	1.89
1161385--1161423	14	2.8	14	84	0	51	35	0	17	46	1.49
1161563--1161608	19	2.4	19	96	0	83	50	17	17	15	1.79
1161895--1161986	20	4.6	20	72	5	69	20	17	25	36	1.94
1166132--1166188	30	1.9	30	82	13	73	40	1	3	54	1.28
1174496--1174534	21	1.9	19	85	10	51	58	23	0	17	1.38
1177086--1177124	20	2.0	20	89	0	60	38	5	15	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1181748--1181786	20	2.0	20	89	0	60	33	5	17	43	1.72
1181800--1181838	20	2.0	20	90	10	62	38	5	10	46	1.60
1181741--1181872	52	2.5	52	87	3	194	34	5	10	49	1.60
1188373--1188452	34	2.3	36	89	4	119	43	23	1	31	1.62
1188950--1189227	139	1.9	142	86	7	393	47	8	6	37	1.58
1189403--1189480	35	2.2	35	90	4	122	29	1	24	44	1.62
1189776--1189822	10	4.7	10	79	10	51	17	17	8	57	1.63
1189847--1189880	10	3.4	10	83	0	50	17	11	11	58	1.62
1189833--1189902	24	3.1	24	76	16	76	15	17	11	55	1.68
1189841--1189881	20	2.0	20	95	0	73	17	17	12	53	1.72
1189925--1189954	13	2.2	14	94	5	53	53	20	20	6	1.67
1209734--1209777	3	14.3	3	81	13	54	65	0	0	34	0.93
1210685--1210730	23	2.2	20	88	11	65	13	17	15	54	1.71
1210689--1210787	37	2.8	36	75	14	98	12	13	17	57	1.65
1210775--1210822	14	3.4	14	85	0	69	8	16	18	56	1.65
1211376--1211418	14	3.0	14	79	3	50	46	4	0	48	1.22

Tables:   1   2   3   4   5   6

The End!