genome.fa.s8373.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008373.1 Hibiscus syriacus cultivar Beakdansim tig00111129_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1027749

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 505 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526264--526369	50	2.1	50	80	0	113	26	28	26	18	1.98
531299--531333	13	2.8	13	91	4	54	40	0	25	34	1.56
532488--532626	70	2.0	69	97	1	260	35	17	15	32	1.91
533704--533729	2	13.0	2	100	0	52	50	0	0	50	1.00
536949--537179	20	11.3	21	85	5	235	26	20	19	33	1.96
536977--537180	41	5.0	42	85	5	172	27	19	19	33	1.96
536949--537168	61	3.6	60	81	6	253	25	20	19	34	1.96
537033--537203	81	2.1	81	83	6	195	25	21	18	35	1.96
540625--540679	14	3.6	14	73	21	56	45	20	23	10	1.82
540607--540733	33	3.8	33	93	0	218	45	18	23	12	1.83
540587--540737	19	8.7	19	68	21	98	44	19	23	12	1.85
540882--540918	14	2.6	14	91	0	65	45	21	0	32	1.52
542269--542335	21	3.2	21	68	4	55	20	17	35	25	1.95
542269--542391	42	2.9	41	79	7	113	23	16	36	23	1.94
542788--542914	19	6.8	19	76	12	120	47	20	21	11	1.81
542788--542885	39	2.5	39	89	1	142	47	19	21	11	1.80
542816--542911	33	2.7	36	84	9	117	47	20	21	9	1.78
542911--543048	19	7.4	19	80	14	137	8	18	24	48	1.76
543145--543446	94	3.2	93	95	0	532	48	18	12	20	1.80
543356--543508	78	1.9	79	88	7	229	43	17	13	25	1.86
545195--545326	19	7.1	19	79	11	148	46	18	22	11	1.81
545333--545379	14	2.8	18	72	27	57	8	25	23	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545352--545397	19	2.3	20	85	3	58	10	21	26	41	1.86
545958--546198	20	11.8	21	84	4	287	20	20	17	41	1.91
545958--546196	41	5.8	41	90	1	363	20	20	17	41	1.91
545958--546209	122	2.1	123	91	0	407	20	19	17	41	1.90
545984--546227	41	6.0	41	89	1	177	22	19	18	39	1.92
546211--546255	21	2.1	21	87	0	63	37	17	26	17	1.93
547397--547554	21	7.8	20	72	7	86	38	25	17	18	1.92
547521--547714	20	9.6	20	79	5	203	36	25	19	19	1.95
547541--547711	60	2.8	60	82	0	225	35	25	18	20	1.95
548090--548160	33	2.2	33	89	0	106	11	23	16	47	1.79
548240--548344	20	5.6	19	72	19	87	44	19	24	11	1.83
548239--548348	33	2.9	41	83	14	139	44	18	25	11	1.83
548299--548352	14	3.5	14	73	22	54	44	22	24	9	1.81
548291--548370	33	2.5	32	93	2	133	46	22	22	8	1.79
548371--548484	33	3.5	33	93	1	203	9	24	21	44	1.82
548366--548482	14	7.1	17	69	24	81	10	24	21	43	1.83
550170--550642	93	5.1	93	98	0	912	22	12	19	45	1.83
550170--550642	185	2.5	186	98	0	912	22	12	19	45	1.83
550702--550814	19	6.5	19	74	19	120	46	28	17	7	1.74
550722--550814	33	2.8	32	91	4	150	46	27	18	7	1.76
550702--550814	52	2.2	51	81	9	131	46	28	17	7	1.74
550810--550944	19	7.6	19	75	16	128	11	19	23	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550832--550888	14	3.7	14	77	20	60	10	21	22	45	1.82
550815--550907	33	2.8	33	95	0	168	10	20	21	47	1.80
552871--552906	14	2.6	14	95	0	63	33	0	22	44	1.53
553013--553112	19	5.5	19	82	12	138	44	17	23	16	1.87
553013--553129	53	2.2	53	93	1	200	42	17	24	15	1.87
553119--553285	19	9.6	19	76	19	168	14	23	17	43	1.87
553125--553285	33	4.7	33	72	17	150	14	22	18	44	1.85
553119--553285	52	3.2	52	96	1	300	14	23	17	43	1.87
553344--553440	19	5.4	19	83	14	134	45	17	22	14	1.85
553344--553459	52	2.2	53	96	3	218	43	18	24	13	1.86
555970--556016	24	2.0	24	87	8	69	38	21	14	25	1.92
556699--556948	20	12.5	20	86	1	268	20	17	24	37	1.93
562003--562042	19	2.1	19	85	0	53	25	0	27	47	1.52
562139--562183	13	3.4	13	80	17	56	44	8	0	46	1.34
562345--562378	7	4.9	7	88	0	50	55	0	2	41	1.15
573490--573532	24	1.9	23	86	13	63	53	0	4	41	1.21
573729--573780	23	2.2	22	81	18	61	67	5	0	26	1.13
573931--573958	8	3.5	8	100	0	56	64	10	0	25	1.26
579851--579875	13	1.9	13	100	0	50	4	24	8	64	1.38
580282--580335	6	9.0	6	91	0	63	75	0	0	24	0.80
580284--580335	9	5.8	9	84	8	70	76	0	0	23	0.78
580282--580333	27	1.9	27	92	0	86	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580483--580571	45	2.0	45	88	4	135	30	19	23	26	1.98
580512--580724	76	2.8	76	89	3	306	32	20	22	25	1.98
580662--580775	45	2.5	45	82	5	131	31	21	21	25	1.98
581716--581779	23	2.8	23	85	0	83	28	25	26	20	1.99
581795--582010	103	2.1	101	95	1	387	36	23	13	25	1.92
582123--582175	24	2.2	24	83	9	65	43	26	1	28	1.65
590221--590263	20	2.1	21	87	8	63	18	13	0	67	1.23
590221--590271	20	2.6	20	81	9	61	17	15	0	66	1.25
603292--603376	44	1.9	45	85	2	118	34	23	11	30	1.91
605240--605302	28	2.2	28	77	5	65	58	0	7	33	1.27
606190--606263	19	4.1	16	71	25	51	66	4	4	25	1.27
607532--607606	3	23.7	3	80	2	60	62	1	0	36	1.04
607676--607742	3	21.7	3	81	3	71	62	1	0	35	1.04
607812--607876	3	21.0	3	80	3	67	60	1	0	38	1.07
607502--607925	136	3.0	141	93	4	741	46	6	9	36	1.64
625837--625875	14	2.7	15	88	4	53	61	0	0	38	0.96
625837--625875	16	2.5	15	84	8	51	61	0	0	38	0.96
626791--626846	27	2.0	28	83	10	71	51	0	5	42	1.24
626840--626909	29	2.3	30	85	11	90	34	5	0	60	1.21
638355--638412	20	2.7	20	81	10	62	32	18	20	27	1.97
639308--639416	31	3.5	31	78	14	125	30	17	17	34	1.93
644629--644681	2	26.5	2	100	0	106	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645387--645504	22	5.4	22	90	0	182	15	24	29	30	1.95
647252--647359	31	3.4	32	71	13	98	30	15	16	37	1.90
647257--647375	63	1.9	62	84	5	159	31	15	18	34	1.93
649409--649439	16	2.0	16	93	6	55	77	6	3	12	1.08
650716--650770	12	4.4	13	82	11	62	70	0	1	27	0.97
650700--650795	47	2.0	47	82	7	115	66	1	4	28	1.16
650718--650771	25	2.1	26	83	10	67	72	0	1	25	0.95
650787--650839	21	2.5	19	75	19	52	67	3	3	24	1.23
650913--650938	13	2.0	13	100	0	52	69	0	7	23	1.14
650962--651016	5	10.8	5	74	18	51	61	0	3	34	1.13
650959--651016	8	6.4	9	77	15	50	62	0	3	34	1.12
651493--651577	37	2.3	37	87	0	116	32	9	15	42	1.79
652339--653507	106	11.0	106	91	0	1782	23	18	24	33	1.96
654464--654519	22	2.5	22	97	0	103	26	12	25	35	1.91
655112--655184	22	3.3	21	79	9	74	1	13	8	76	1.07
655122--655182	29	2.1	29	82	8	72	1	11	6	80	0.97
655121--655185	22	2.9	22	80	8	78	1	13	7	76	1.06
659942--660015	14	5.4	13	85	7	51	62	0	1	36	1.04
659977--660013	2	18.5	2	100	0	74	51	0	0	48	1.00
660160--660185	13	2.0	13	100	0	52	69	0	7	23	1.14
660295--660326	2	16.5	2	93	6	57	53	0	0	46	1.00
660724--660808	37	2.3	37	87	0	116	32	9	15	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667305--667533	123	1.9	123	83	4	302	48	5	14	31	1.67
667428--667729	144	2.1	147	82	7	373	52	4	12	30	1.60
667477--667784	144	2.1	144	78	11	315	53	4	11	29	1.57
679636--679689	17	3.1	17	83	2	63	31	29	22	16	1.96
681749--681789	20	2.0	20	100	0	82	19	12	43	24	1.85
683510--683558	23	2.1	23	88	7	73	28	2	12	57	1.46
690587--690631	20	2.2	20	88	0	63	15	22	0	62	1.33
693885--693933	23	2.1	23	88	7	73	28	2	12	57	1.46
695465--695655	75	2.5	74	92	3	319	24	28	26	19	1.99
705777--705803	2	13.5	2	100	0	54	51	0	48	0	1.00

Tables:   1   2   3   4   5