genome.fa.s8373.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008373.1 Hibiscus syriacus cultivar Beakdansim tig00111129_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1027749

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 505 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
947317--947388	24	3.0	24	83	0	81	38	18	16	26	1.91
949201--949266	24	2.8	24	80	0	69	42	16	16	24	1.88
951078--951148	24	3.0	24	78	0	79	38	19	16	25	1.93
954280--954373	46	2.1	45	97	2	179	31	8	12	46	1.72
959675--959796	64	1.9	64	90	5	194	28	19	22	29	1.98
962456--962535	22	3.6	23	76	8	94	25	22	26	26	2.00
962457--962535	21	3.6	22	79	5	97	25	22	25	26	2.00
962607--962642	15	2.4	15	100	0	72	13	13	33	38	1.85
968365--968565	65	3.1	65	82	10	234	26	18	22	31	1.97
969663--969741	41	1.9	41	100	0	158	34	24	13	27	1.93
968906--970515	824	2.0	824	96	0	2952	36	18	18	27	1.94
976606--976792	65	2.9	62	78	14	182	29	19	21	29	1.98
976633--976792	65	2.5	65	87	5	218	28	18	21	30	1.97
977090--978329	157	8.0	158	79	9	1256	27	18	5	48	1.69
977658--978077	160	2.6	157	86	4	567	27	20	5	47	1.71
977090--978329	470	2.7	462	85	6	1572	27	18	5	48	1.69
977934--978223	138	2.1	140	88	3	422	26	20	5	47	1.72
980630--980739	55	2.0	55	96	0	202	38	22	6	32	1.80
986023--986071	19	2.6	19	90	0	71	32	16	26	24	1.96
989759--989792	12	2.7	13	86	9	52	44	8	5	41	1.60
993618--993773	31	5.0	31	92	1	251	39	22	18	19	1.93
994721--994790	19	3.9	19	72	24	71	21	34	28	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
997812--997967	31	5.0	31	94	1	260	38	23	18	19	1.93
998917--999024	19	6.1	19	65	25	67	22	30	28	18	1.97
998918--999015	34	2.9	34	96	0	178	21	28	30	19	1.97

Tables:   1   2   3   4   5

The End!