genome.fa.s8419.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008419.1 Hibiscus syriacus cultivar Beakdansim tig00111199_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1038719

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209958--210276	105	3.0	103	80	7	381	41	11	16	30	1.83
210651--211203	4	138.8	4	97	0	1011	25	1	24	48	1.58
212355--212397	21	2.0	23	86	9	63	6	16	4	72	1.24
212364--212416	9	5.6	9	77	20	54	1	15	3	79	0.96
212380--212420	5	8.6	5	82	17	52	0	17	0	82	0.66
212364--212420	18	2.9	20	82	10	64	1	15	3	78	0.96
212379--212420	13	3.2	13	86	6	57	0	16	0	83	0.65
212400--212487	34	2.7	33	84	10	103	3	17	9	70	1.27
212423--212496	15	4.7	15	71	19	53	4	16	9	70	1.29
217789--217860	34	2.2	32	85	11	94	5	16	4	73	1.18
218549--218600	19	2.6	21	84	6	72	46	5	11	36	1.64
222774--222808	15	2.3	15	100	0	70	51	11	20	17	1.75
223911--223961	21	2.4	22	77	9	61	60	3	11	23	1.47
224146--224321	86	2.0	86	92	0	289	42	11	17	28	1.85
224660--224704	16	2.9	14	81	18	54	66	2	2	28	1.15
224660--224726	32	2.1	31	83	10	82	67	2	1	28	1.14
225023--225069	24	2.0	24	83	8	60	38	19	10	31	1.86
225125--225176	7	7.6	7	82	10	63	34	0	11	53	1.37
225132--225172	13	3.2	13	96	0	73	31	0	12	56	1.36
225234--225266	2	16.5	2	100	0	66	48	0	0	51	1.00
225296--225351	22	2.4	24	76	11	62	28	1	3	66	1.19
225723--225858	57	2.4	57	91	0	209	32	25	13	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226283--226311	13	2.1	14	93	6	51	13	20	17	48	1.81
226358--226553	57	3.5	57	90	2	306	28	15	25	31	1.95
228802--228857	24	2.3	24	100	0	112	25	30	21	23	1.99
229403--229459	20	2.9	19	90	10	89	19	22	10	47	1.80
229409--229459	20	2.5	20	96	0	93	19	21	11	47	1.81
229774--229849	40	1.9	40	91	0	125	36	21	14	27	1.92
234806--235068	95	2.8	94	86	5	343	29	17	17	35	1.93
235029--235107	33	2.4	33	97	0	149	29	16	17	36	1.92
235095--235140	21	2.2	21	84	7	58	36	19	15	28	1.92
237546--237581	5	7.6	5	87	12	58	44	0	19	36	1.51
237546--237581	9	3.8	10	85	14	58	44	0	19	36	1.51
237546--237581	14	2.6	14	100	0	72	44	0	19	36	1.51
239613--239638	13	2.0	13	100	0	52	23	0	46	30	1.53
239812--239884	20	3.5	20	83	7	101	45	13	15	26	1.83
240410--240570	80	2.0	80	97	0	304	28	18	21	31	1.97
249730--249763	17	1.9	18	88	5	52	29	0	5	64	1.17
249730--249800	29	2.5	30	82	13	96	32	1	2	63	1.18
253360--253453	31	3.0	31	93	3	154	19	19	23	38	1.93
257391--257471	31	2.6	31	92	0	135	19	19	20	39	1.93
261640--261691	22	2.4	21	75	12	52	50	11	1	36	1.50
261669--261710	15	2.9	14	82	17	50	52	4	0	42	1.22
273485--273520	16	2.2	17	95	5	65	22	2	0	75	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273485--273520	17	2.2	16	90	9	56	22	2	0	75	0.94
273525--273639	16	7.7	14	79	13	56	42	1	0	54	1.16
273578--273638	2	30.5	2	100	0	122	49	0	0	50	1.00
273917--274024	4	26.2	4	73	15	69	21	9	0	68	1.23
284377--284412	9	4.0	9	88	0	54	86	2	11	0	0.68
284451--284510	29	2.0	30	84	9	79	80	1	15	3	0.93
285592--285983	99	3.8	105	79	9	443	34	25	17	21	1.96
287850--287883	17	2.0	17	94	0	59	29	2	0	67	1.05
287866--287973	57	2.0	57	82	10	136	37	1	2	58	1.23
287950--287980	2	15.5	2	100	0	62	48	0	0	51	1.00
288232--288309	24	3.2	24	74	16	72	17	11	0	70	1.16
288251--288381	4	31.8	4	69	13	61	21	10	2	65	1.34
294624--294668	22	2.0	22	100	0	90	17	8	17	55	1.67
295647--295728	41	2.0	40	88	2	119	35	20	17	26	1.95
295869--295901	17	1.9	17	100	0	66	30	18	24	27	1.98
297879--297964	31	2.7	32	80	7	104	29	13	22	34	1.93
309199--309235	2	19.0	2	94	5	67	51	0	0	48	1.00
310271--310315	2	22.5	2	100	0	90	51	0	0	48	1.00
313326--313407	40	2.0	40	88	0	119	28	14	23	34	1.94
313506--313716	45	4.7	45	88	1	309	39	7	21	30	1.81
313506--313716	89	2.4	90	88	1	309	39	7	21	30	1.81
317283--317320	10	3.8	10	80	13	51	36	10	18	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317288--317326	20	2.0	20	94	0	69	33	10	20	35	1.86
323588--323626	20	2.0	20	89	0	60	33	10	23	33	1.88
328466--328547	40	2.1	39	82	8	96	32	13	19	34	1.91
328525--328597	33	2.2	33	100	0	146	19	21	21	36	1.95
328597--328652	14	4.0	14	81	4	60	12	12	19	55	1.68
329727--329778	16	3.3	15	89	5	77	9	11	21	57	1.62
329728--329775	15	3.1	15	93	3	78	8	12	22	56	1.63
329845--329877	16	2.1	16	94	0	57	9	12	21	57	1.62
331345--331392	25	2.0	24	91	4	78	56	0	6	37	1.25
331430--331457	8	3.5	8	100	0	56	42	0	0	57	0.99
332942--333359	209	2.0	209	98	0	809	37	13	14	34	1.85
333624--333663	18	2.4	16	84	12	53	50	2	0	47	1.14
338346--338376	16	1.9	16	93	0	53	25	19	6	48	1.72
338676--338751	20	3.9	20	75	6	84	27	27	21	23	1.99
339658--339695	2	19.0	2	94	0	67	47	0	0	52	1.00
343729--343786	21	2.8	21	86	0	80	37	3	36	22	1.71
354662--354722	29	2.1	29	100	0	122	36	21	3	39	1.70
356479--356534	28	2.0	28	85	0	76	35	14	7	42	1.73
359646--359680	2	17.5	2	100	0	70	48	0	0	51	1.00
360095--360153	28	2.1	28	96	0	109	49	22	3	25	1.65
364323--364421	21	4.8	20	75	6	81	37	23	18	21	1.94
364388--364697	40	7.8	40	89	4	367	37	24	17	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364388--364697	20	15.5	20	79	6	279	37	24	17	20	1.93
364388--364697	60	5.2	60	82	3	320	37	24	17	20	1.93
365380--365426	24	2.0	24	87	8	69	25	14	21	38	1.92
367858--368022	33	4.7	34	81	13	183	46	18	21	13	1.83
367872--368060	19	10.7	19	78	17	219	45	17	21	15	1.85
367858--368060	52	3.9	52	86	10	281	45	18	21	14	1.85
368069--368166	19	5.4	19	84	13	143	14	22	17	45	1.84
368050--368166	53	2.2	53	96	1	218	13	24	17	43	1.86
368273--368309	14	2.6	14	91	0	65	45	21	0	32	1.52
370233--370298	19	3.4	19	93	2	105	45	30	15	9	1.77
370289--370345	14	3.7	14	77	20	60	45	22	21	10	1.82
370270--370362	33	2.8	33	91	0	150	47	23	19	9	1.79
370249--370367	19	6.8	18	78	18	101	47	24	19	9	1.78
370363--370491	19	7.3	19	75	17	125	8	17	28	45	1.77
370363--370454	33	2.8	33	93	3	150	7	18	28	45	1.76
370539--371192	93	7.1	93	98	0	1258	45	19	13	22	1.84
370539--371192	278	2.4	279	98	0	1258	45	19	13	22	1.84
372894--372991	14	6.3	14	69	21	61	45	21	22	10	1.81
372889--373003	33	3.5	33	96	0	212	46	20	21	11	1.81
372911--373008	19	5.7	19	69	22	90	44	21	21	12	1.84
373020--373076	14	3.7	14	75	20	60	8	24	22	43	1.81
373004--373084	33	2.5	33	95	0	144	8	22	22	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373061--373136	21	3.7	21	83	3	109	13	25	15	46	1.82
373060--373137	41	1.9	41	97	0	147	14	25	15	44	1.84
373216--373286	33	2.2	33	92	0	115	47	18	22	11	1.80
373468--373522	22	2.5	22	75	0	65	21	16	38	23	1.93
373669--373822	20	7.7	20	79	7	159	18	18	25	37	1.94
373668--373822	40	3.8	40	80	4	177	18	18	25	37	1.93
373809--373891	21	4.0	21	73	6	78	25	16	24	33	1.96
373789--373887	42	2.4	43	77	11	100	21	18	23	37	1.94
374300--374344	14	3.4	14	77	17	51	55	0	0	44	0.99
376567--376603	18	2.1	18	100	0	74	37	16	10	35	1.83

Tables:   1   2   3   4   5