genome.fa.s8420.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008420.1 Hibiscus syriacus cultivar Beakdansim tig00111200_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1020524

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 664 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
924098--924172	38	2.0	37	82	10	91	48	2	2	46	1.30
924676--924727	24	2.1	26	92	7	90	59	0	0	40	0.97
931587--931626	20	2.0	20	95	0	71	45	12	5	37	1.64
931640--931679	20	2.0	21	90	5	64	45	15	5	35	1.68
931693--931731	20	2.0	20	94	0	69	41	17	5	35	1.72
931585--931732	53	2.8	52	95	3	271	47	13	5	33	1.65
936301--936340	20	2.0	20	90	9	64	45	10	5	40	1.60
936354--936393	20	2.0	21	90	5	64	45	15	5	35	1.68
936407--936445	20	2.0	20	94	0	69	41	17	5	35	1.72
936299--936446	52	2.8	52	94	3	262	47	12	5	33	1.65
942127--942160	12	2.6	14	90	9	54	50	17	17	14	1.79
944453--944492	21	1.9	21	94	0	71	30	15	7	47	1.72
944487--944585	33	3.0	33	94	1	164	32	7	15	45	1.73
944571--944625	13	4.2	13	75	13	58	34	3	12	49	1.59
945022--945077	15	3.6	15	79	9	67	32	12	12	42	1.80
945041--945074	18	1.9	18	94	5	61	38	11	11	38	1.79
945169--945200	16	2.0	17	88	11	50	43	21	21	12	1.86
945682--945752	35	2.0	35	100	0	142	39	14	18	28	1.89
947905--947947	22	1.9	23	81	13	54	39	6	6	46	1.58
948506--948558	21	2.5	21	78	0	61	20	24	18	35	1.95
948548--948674	20	6.3	20	81	3	148	38	19	18	22	1.93
949536--949589	24	2.2	24	90	0	81	22	18	18	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
952016--952104	20	4.4	21	83	5	114	35	23	21	19	1.95
952016--952104	40	2.2	40	88	4	126	35	23	21	19	1.95
952109--952154	19	2.4	19	85	0	65	50	15	19	15	1.79
952310--952346	14	2.6	14	86	0	56	48	21	0	29	1.50
953702--953813	42	2.7	42	76	5	111	22	18	37	21	1.94
954360--954428	20	3.5	20	86	4	86	37	24	18	18	1.94
954453--954559	40	2.8	37	89	8	121	19	20	20	39	1.93
954473--954596	20	6.5	20	85	10	170	19	20	21	38	1.93
956488--956561	33	2.2	34	85	7	98	44	25	18	10	1.82
957127--957178	20	2.5	20	81	3	59	19	23	21	36	1.95
957175--957220	21	2.2	21	88	0	65	36	17	28	17	1.92
962014--962047	15	2.3	15	89	0	50	73	0	2	23	0.97
962056--962088	14	2.3	15	94	5	59	72	0	12	15	1.12
963719--963769	3	17.0	3	80	8	59	66	1	1	29	1.13
964083--964279	84	2.3	84	87	1	270	26	17	22	32	1.96
964369--964592	124	1.8	124	92	0	376	26	18	23	31	1.98
964671--964948	116	2.5	113	87	5	377	25	18	24	31	1.98
964366--965194	363	2.3	361	85	6	1106	26	18	23	31	1.97
964783--965360	239	2.4	242	85	4	741	26	18	22	31	1.97
966442--966686	94	2.6	95	86	5	316	31	20	17	31	1.95
969106--969135	14	2.1	15	93	6	53	73	0	13	13	1.10
970737--970802	3	22.3	3	81	9	82	71	1	0	27	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
972535--972787	125	2.0	125	99	0	497	29	20	11	38	1.88
973419--973508	31	2.8	31	79	12	85	50	11	3	35	1.55
973676--973735	31	2.0	30	87	9	86	45	1	8	45	1.43
980931--981006	40	1.9	40	91	0	125	51	18	13	17	1.76
982348--982423	39	1.9	39	86	5	109	19	15	25	39	1.91
983054--983084	2	15.5	2	100	0	62	51	0	0	48	1.00
983732--983765	17	1.9	18	94	5	61	35	5	2	55	1.39
990778--990841	28	2.4	27	80	12	78	53	15	1	29	1.52
997438--997482	21	2.1	21	83	0	54	48	2	11	37	1.51
1001142--1001203	30	2.1	29	93	3	106	54	6	9	29	1.57
1001983--1002020	16	2.3	17	86	4	51	76	0	2	21	0.91
1004164--1004366	55	3.5	55	68	16	156	23	16	25	34	1.95
1004091--1004808	121	5.9	121	91	0	1168	23	15	25	34	1.95
1004831--1005099	64	4.4	59	76	13	240	32	12	19	35	1.89
1004893--1005099	64	3.2	64	84	1	290	32	13	18	35	1.90
1004814--1005102	127	2.3	120	82	5	337	32	13	19	35	1.90
1009703--1009739	3	12.3	3	100	0	74	67	0	0	32	0.91
1010372--1010411	21	1.9	21	94	0	71	45	10	20	25	1.81
1012925--1012973	22	2.1	22	85	7	71	48	4	8	38	1.52
1013907--1013954	3	16.0	3	100	0	96	33	0	0	66	0.92

Tables:   1   2   3   4   5   6

The End!