genome.fa.s8421.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008421.1 Hibiscus syriacus cultivar Beakdansim tig00111201_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1159951

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 718 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231988--232096	45	2.4	45	81	6	121	28	21	25	24	1.99
232119--232222	45	2.3	45	83	0	127	31	20	22	25	1.98
233332--233479	54	2.7	53	85	11	185	29	20	13	36	1.91
234349--234700	192	1.8	190	80	8	417	29	22	15	32	1.95
237460--237522	32	2.0	32	93	0	108	23	19	15	41	1.90
244223--244264	2	22.0	2	80	9	52	45	0	0	54	0.99
244217--244263	24	2.0	24	91	0	76	44	0	0	55	0.99
244202--244264	26	2.3	26	86	5	81	44	0	0	55	0.99
244286--244339	21	2.3	23	81	15	67	66	1	0	31	1.02
245758--245818	3	19.7	3	80	6	59	59	0	0	40	0.98
246897--247416	254	2.1	253	84	1	684	35	14	18	32	1.90
246945--247469	253	2.1	253	83	2	660	36	16	16	31	1.91
265659--265698	21	1.9	22	85	10	57	22	5	5	67	1.30
265666--265711	21	2.2	21	81	14	51	26	4	4	65	1.30
265656--265727	37	2.0	36	84	13	94	26	5	2	65	1.28
267372--267442	29	2.4	30	81	4	83	42	7	19	30	1.78
267810--267839	15	2.0	15	93	0	51	30	0	30	40	1.57
269052--269081	14	2.2	13	94	5	51	23	20	23	33	1.97
269098--269157	22	2.7	23	76	10	61	20	26	21	31	1.98
277121--277154	17	1.9	18	88	5	52	29	0	5	64	1.17
277152--277201	13	3.6	13	87	12	73	24	0	2	74	0.93
278169--278212	22	2.0	22	95	0	79	43	25	4	27	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281597--281668	26	2.7	27	72	20	78	31	16	18	33	1.93
287498--287563	22	3.0	21	76	12	71	19	9	6	65	1.42
287547--287581	18	1.9	18	100	0	70	17	11	8	62	1.52
287804--287842	11	3.5	11	82	6	51	71	2	0	25	0.98
289981--290031	22	2.3	22	80	6	59	31	3	0	64	1.11
293545--293574	12	2.5	12	88	0	51	30	10	0	60	1.30
294875--294930	19	2.9	19	97	0	103	32	30	16	21	1.95
294956--295125	20	8.4	20	80	6	182	29	26	18	25	1.98
295010--295125	41	2.9	41	83	10	141	28	27	18	25	1.98
294956--295108	61	2.5	62	86	5	215	30	25	18	25	1.98
296187--296223	14	2.6	14	91	4	56	51	21	21	5	1.68
298260--298294	18	1.9	18	94	0	61	54	25	2	17	1.57
298352--298774	140	3.0	140	95	0	765	29	12	14	43	1.82
298745--298955	20	10.9	20	81	6	245	33	22	18	26	1.96
298994--299071	20	3.9	20	89	0	111	12	17	25	43	1.85
299175--299225	27	1.9	26	92	4	84	50	19	0	29	1.48
300518--300640	42	2.9	42	80	7	151	24	18	35	21	1.95
300518--300635	21	5.6	21	72	4	87	23	18	35	22	1.96
301184--301248	19	3.4	19	86	0	85	52	23	12	12	1.72
301299--301352	20	2.7	21	80	8	67	22	20	24	33	1.97
301320--301367	20	2.4	20	92	0	78	16	20	25	37	1.93
301264--301368	40	2.9	35	71	12	95	18	20	21	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301354--301397	20	2.2	20	91	0	70	15	13	20	50	1.78
303296--303382	20	4.4	20	85	1	95	45	24	16	13	1.83
303761--303808	22	2.2	22	88	0	69	25	12	39	22	1.89
303983--304065	20	4.1	20	74	9	60	27	20	21	30	1.98
304082--304127	19	2.4	19	85	3	56	21	17	30	30	1.96
304093--304129	19	1.9	19	94	0	65	21	16	29	32	1.95
305945--305995	20	2.5	19	87	6	57	50	1	15	31	1.55
305951--306013	21	3.0	21	84	9	85	49	3	14	33	1.59
306524--306556	16	1.9	18	88	11	52	48	21	3	27	1.64
307366--307421	19	2.9	19	89	0	85	19	28	32	19	1.97
309247--309375	66	2.0	66	85	0	177	18	22	20	37	1.94
311375--311416	19	2.2	19	86	0	57	23	30	30	14	1.94
313171--313206	12	3.0	12	83	0	54	8	25	16	50	1.73
313268--313397	66	2.0	66	85	0	179	19	20	20	39	1.93
316438--316523	44	2.0	43	84	6	111	27	20	9	41	1.83
317754--317842	24	3.7	25	77	15	89	39	19	16	24	1.92
317740--317848	24	4.5	24	78	6	87	43	18	13	24	1.86
320174--320245	30	2.4	30	86	4	101	31	23	23	20	1.98
320244--320298	13	3.9	14	79	9	51	23	25	29	21	1.99
322328--322380	24	2.2	24	90	6	81	39	18	15	26	1.90
328240--328312	27	2.6	27	78	6	74	12	17	4	65	1.40
346564--346617	26	2.1	26	82	6	65	42	20	7	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347888--347933	21	2.2	20	85	14	58	41	0	0	58	0.98
356192--356242	23	2.3	23	89	3	77	21	23	33	21	1.97
356204--356253	22	2.2	23	85	3	66	20	32	22	26	1.98
363393--363596	43	4.8	43	72	8	139	28	14	21	34	1.93
363419--363596	86	2.1	85	80	5	189	30	15	21	32	1.94
364097--364154	21	2.8	21	86	0	71	5	32	17	44	1.70
364138--364177	21	1.9	21	89	0	62	2	40	10	47	1.50
369055--369116	19	3.2	19	75	6	54	32	0	12	54	1.38
369743--369785	18	2.4	18	88	0	59	20	4	2	72	1.14
370938--370985	22	2.2	22	96	0	87	37	16	8	37	1.79
371541--371574	15	2.3	15	94	0	59	44	20	26	8	1.81
375477--375528	14	3.8	14	76	5	52	17	3	1	76	1.02
375685--375716	16	2.0	16	93	0	55	62	12	15	9	1.54
377331--377466	65	2.1	65	82	9	163	27	1	16	54	1.51
378031--378073	18	2.4	18	88	0	59	23	4	0	72	1.04
380818--380895	41	1.9	41	84	5	104	35	17	15	30	1.91
382095--382142	22	2.1	23	88	11	73	35	16	6	41	1.74
382593--382716	41	3.0	40	70	8	97	27	20	22	29	1.99
382546--382716	82	2.1	82	85	4	229	25	21	22	30	1.99
383098--383247	72	2.1	72	92	2	248	30	17	22	30	1.97
388295--388329	16	2.2	16	100	0	70	37	5	28	28	1.80
391309--391399	43	2.1	43	97	0	173	42	17	16	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399590--399641	26	2.0	26	88	0	77	42	21	19	17	1.89
402144--402173	14	2.1	14	93	0	51	43	20	10	26	1.83
402160--402397	126	1.9	126	92	0	406	36	12	10	40	1.77
402524--402552	12	2.5	12	94	5	51	41	6	6	44	1.58
402403--402769	128	2.8	133	88	7	543	40	10	11	36	1.77
408953--408983	11	2.8	11	100	0	62	83	0	0	16	0.64
412682--412759	31	2.5	31	89	0	120	23	11	12	52	1.72
422180--422241	3	20.0	3	87	12	90	32	0	0	67	0.91
423547--423573	3	9.0	3	100	0	54	33	0	0	66	0.92
423763--423804	20	2.2	19	86	4	57	33	0	2	64	1.07
423660--423895	120	2.0	117	81	5	278	40	7	7	44	1.60
424398--424461	22	2.7	24	83	11	71	26	1	1	70	1.05
427726--427757	15	2.1	15	94	0	55	25	18	9	46	1.79
435068--435139	10	6.8	11	78	12	64	80	0	19	0	0.71
435052--435134	27	3.1	27	81	8	98	79	0	19	1	0.80
435802--436017	114	1.9	114	89	0	333	34	14	20	30	1.93
436719--437151	113	3.8	112	86	2	609	37	13	19	28	1.90
437495--437560	3	21.0	3	79	14	71	34	0	0	65	0.93
437494--437550	7	8.3	7	81	14	66	33	0	0	66	0.92
437495--437551	13	4.2	13	84	8	78	35	0	0	64	0.93
437495--437560	28	2.3	29	92	7	109	34	0	0	65	0.93
437495--437559	16	3.9	17	80	11	64	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439104--439145	20	2.2	19	86	4	57	33	0	2	64	1.07
443600--443762	64	2.6	62	79	8	177	27	14	26	30	1.95
443709--443759	19	2.7	19	85	8	70	25	15	35	23	1.94
444394--444419	2	13.0	2	100	0	52	50	0	0	50	1.00
445425--445504	24	3.5	23	75	14	85	27	22	26	23	2.00
445402--445524	44	2.8	42	74	12	113	24	20	28	26	1.99
449181--449224	21	2.2	20	84	12	54	27	13	6	52	1.66
450176--450235	30	2.0	30	100	0	120	20	23	20	36	1.95
451346--451508	64	2.5	62	80	7	177	28	15	25	30	1.96
451455--451505	19	2.7	19	85	8	70	25	15	35	23	1.94

Tables:   1   2   3   4   5   6