genome.fa.s8421.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008421.1 Hibiscus syriacus cultivar Beakdansim tig00111201_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1159951

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 718 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618026--618066	12	3.5	12	96	3	75	24	26	24	24	2.00
620881--620938	10	6.0	10	75	13	50	67	5	5	22	1.31
620879--620933	28	2.0	28	85	7	76	65	5	5	23	1.35
623080--623128	20	2.5	20	83	16	66	36	24	12	26	1.91
625555--625602	20	2.4	20	100	0	96	39	14	18	27	1.90
626649--626674	2	13.0	2	100	0	52	50	0	0	50	1.00
635958--636000	23	1.9	23	90	4	70	53	0	0	46	1.00
636119--636217	39	2.6	38	84	6	121	53	1	8	37	1.37
640420--640671	47	5.4	47	89	2	375	22	22	9	45	1.82
640426--640597	20	7.7	20	70	22	92	22	23	9	44	1.83
640583--640739	74	2.1	74	91	0	251	21	21	10	46	1.81
641140--641210	22	3.5	20	75	9	72	29	23	12	33	1.92
643048--643096	16	3.1	16	73	26	50	44	0	18	36	1.50
646994--647048	28	2.0	28	92	0	92	38	3	0	58	1.16
649378--649415	20	1.9	20	100	0	76	52	2	26	18	1.58
652076--652108	16	2.1	16	88	5	50	42	6	0	51	1.26
655593--655636	9	4.8	9	84	15	54	77	4	2	15	1.04
655728--655772	12	3.9	12	77	19	51	80	0	4	15	0.87
671117--671160	9	4.8	9	80	5	52	75	6	2	15	1.12
671278--671311	2	17.5	2	93	6	61	50	0	0	50	1.00
672422--672452	16	1.9	16	93	0	53	9	12	29	48	1.73
673330--673392	30	2.2	27	83	8	72	42	7	12	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686767--686852	23	3.8	23	76	1	84	23	22	19	34	1.96
686810--686857	23	2.1	23	84	3	62	18	18	27	35	1.95
688168--688242	10	7.7	10	69	21	61	57	21	12	9	1.62
688172--688236	16	4.1	16	95	0	121	56	23	12	7	1.61
688985--689040	14	4.3	14	76	17	66	53	23	12	10	1.69
688965--689039	24	3.1	24	86	3	98	56	20	10	13	1.66
689603--689638	18	1.9	19	88	5	56	27	5	5	61	1.41
690365--690440	38	2.0	38	94	0	134	31	7	23	36	1.84
690828--690915	29	3.0	30	81	3	99	40	4	18	36	1.71
694488--694522	3	11.7	3	100	0	70	68	0	0	31	0.90
722968--723012	16	2.8	16	86	3	54	71	2	2	24	1.09
723630--723692	19	3.2	19	75	4	54	55	12	0	31	1.37
723650--723816	76	2.2	74	86	6	228	55	12	1	30	1.45
723760--724062	146	2.0	149	91	5	486	39	15	8	36	1.77
725567--725629	5	12.8	5	83	12	51	73	0	7	19	1.08
725566--725590	11	2.3	11	100	0	50	84	0	0	16	0.63
725564--725628	19	3.4	18	77	8	60	73	0	7	18	1.06
725579--725623	23	1.9	24	86	4	65	68	0	11	20	1.19
728563--728611	19	2.6	18	81	9	62	73	2	4	20	1.10
730934--730960	14	1.9	14	100	0	54	40	14	0	44	1.46
743032--743083	27	1.9	27	88	0	77	40	1	19	38	1.63
743107--743149	23	1.9	23	90	4	70	34	6	11	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
744617--744802	101	1.8	102	82	5	243	55	13	2	27	1.51
748786--748867	29	2.8	29	92	1	128	30	13	13	42	1.82
752585--752623	18	2.2	18	100	0	78	33	0	25	41	1.56
756340--756373	6	5.5	6	86	6	50	85	0	0	14	0.60
756316--756373	30	1.9	30	82	6	73	79	1	0	18	0.82
757562--757607	7	6.4	7	80	5	56	56	6	0	36	1.25
757544--757586	14	3.1	14	86	6	61	72	0	0	27	0.85
757595--757671	27	2.9	27	84	5	102	48	3	0	48	1.20
757595--757671	26	2.9	27	88	5	102	48	3	0	48	1.20
757633--757728	38	2.5	39	93	1	167	44	7	1	46	1.38
757696--757758	28	2.3	27	88	2	99	41	9	3	46	1.52
757633--757749	39	3.0	38	86	6	155	44	7	1	46	1.42
757724--757803	41	2.1	38	84	11	101	46	7	2	43	1.45
759273--759357	43	2.0	43	83	4	109	17	23	15	43	1.87
767870--767904	14	2.5	14	95	0	61	5	37	14	42	1.69
769831--769874	6	7.3	6	80	19	56	81	0	0	18	0.68
769832--769874	9	4.8	9	81	18	54	81	0	0	18	0.69
769804--769870	32	2.1	33	83	8	84	76	2	1	19	1.00
771085--771143	14	4.1	14	82	10	57	57	1	1	38	1.19
771107--771152	2	24.0	2	83	16	62	50	2	0	47	1.13
771096--771152	14	3.9	15	84	13	75	52	1	0	45	1.11
780811--780856	21	2.2	21	96	0	83	36	17	30	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
780845--780958	20	5.7	20	83	6	113	31	25	18	24	1.97
780842--780958	61	1.9	61	85	0	162	33	24	17	23	1.97
781476--781543	20	3.5	19	80	6	64	48	25	14	11	1.78
781539--781689	19	8.1	19	80	10	168	13	21	20	45	1.85
781539--781689	39	4.1	38	77	10	150	13	21	20	45	1.85
783746--783812	21	3.2	21	68	6	55	23	34	20	20	1.97
783690--783782	42	2.2	42	80	3	107	21	37	16	24	1.93
785175--785210	14	2.6	14	95	0	63	30	0	25	44	1.54
785317--785383	19	3.8	19	71	18	72	43	19	23	13	1.86
785388--785538	19	8.7	19	64	21	80	15	22	20	41	1.89
785392--785518	33	3.9	32	87	8	193	14	22	19	42	1.88
785385--785517	66	2.0	66	97	0	248	16	22	19	41	1.90
787811--787835	12	2.1	12	100	0	50	0	28	0	72	0.86
789125--789182	20	2.9	20	92	0	89	37	20	22	18	1.94
789206--789259	14	3.5	14	75	22	54	11	22	20	46	1.82
789188--789258	33	2.2	33	81	0	79	19	21	21	38	1.94
789201--789278	33	2.4	33	88	0	111	12	24	21	41	1.88
789366--789402	14	2.6	14	86	0	56	48	21	0	29	1.50
791268--791333	19	3.4	19	83	4	87	36	24	24	15	1.93
791322--791379	14	3.9	14	79	16	71	48	25	17	8	1.75
791306--791384	32	2.4	33	95	2	142	46	24	18	10	1.80
791391--791486	19	5.6	17	70	21	69	12	19	21	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
791413--791470	14	3.9	14	77	16	62	10	17	24	48	1.78
791396--791486	32	2.8	33	93	3	157	12	18	21	47	1.81
791471--791514	20	2.2	20	88	4	63	18	25	20	36	1.95
792007--792051	18	2.5	18	88	0	72	13	15	44	26	1.83
793671--793714	22	2.0	22	90	0	70	18	13	45	22	1.84
793882--793933	20	2.6	20	84	0	68	28	19	25	26	1.98
793944--793995	20	2.5	20	81	3	59	17	25	19	38	1.93
795653--795709	25	2.3	25	90	0	87	28	31	22	17	1.97
798437--798461	12	2.1	12	100	0	50	48	8	8	36	1.62
800609--800661	23	2.3	23	83	0	61	41	22	20	15	1.89
815290--815330	21	2.0	21	85	0	55	36	7	19	36	1.80
815622--815739	17	6.8	16	71	15	58	76	5	4	14	1.11
815605--815705	8	12.0	8	74	10	67	76	4	1	16	1.06
815614--815749	36	3.9	33	75	20	125	75	4	3	16	1.10
815588--815768	71	2.6	67	75	18	170	73	3	3	18	1.14
816307--816350	23	1.9	23	86	9	63	40	6	4	47	1.50
816601--816897	14	20.5	14	66	20	60	26	1	26	45	1.60
816616--816853	28	9.2	28	64	22	117	28	1	24	46	1.61
816687--816748	21	2.9	22	86	9	85	25	0	27	46	1.53
816730--816871	57	2.5	58	88	4	198	28	2	23	46	1.64
816602--816832	7	32.7	7	65	24	69	27	1	25	45	1.61
816837--816875	16	2.4	16	86	0	51	25	0	23	51	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
818749--818880	11	11.6	11	79	7	140	28	24	23	23	1.99
818749--818893	34	4.2	34	83	6	186	29	24	22	23	1.99
818792--818893	23	4.4	23	98	0	195	31	24	21	22	1.98
820657--821017	180	2.0	181	99	0	715	35	15	9	38	1.81
821505--821554	19	2.6	19	84	9	66	48	10	22	20	1.79
821711--821785	38	2.0	37	84	5	98	48	4	1	46	1.29
822150--822174	11	2.3	11	100	0	50	52	40	0	8	1.31
831031--831094	26	2.6	26	78	14	73	65	0	0	34	0.93
831286--831509	123	1.8	121	84	3	306	25	16	14	42	1.87
831425--832170	113	6.7	113	87	5	989	28	18	14	37	1.91

Tables:   1   2   3   4   5   6