genome.fa.s8425.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008425.1 Hibiscus syriacus cultivar Beakdansim tig00111208_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2340112

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  1  of  12  ( 1340 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415--475	21	2.8	21	80	7	59	21	8	3	67	1.32
447--536	36	2.6	35	82	8	103	32	2	1	64	1.13
481--571	15	6.1	15	67	18	55	31	2	1	64	1.12
477--555	36	2.2	36	82	10	92	31	1	1	65	1.08
471--588	42	2.7	44	82	11	127	30	2	1	65	1.16
662--710	21	2.4	21	82	3	55	10	8	6	75	1.18
11142--11206	30	2.2	30	91	0	103	24	35	24	15	1.94
11190--11232	19	2.3	19	91	0	68	23	27	34	13	1.93
12587--12620	16	2.1	16	88	0	50	47	17	11	23	1.81
16608--16652	18	2.5	18	85	0	63	26	22	13	37	1.91
21517--21554	19	2.1	19	95	5	69	71	5	5	18	1.25
22905--22949	20	2.3	19	84	3	54	35	0	2	62	1.08
22900--22955	29	2.0	30	83	13	75	37	0	1	60	1.07
22948--23045	3	33.7	3	87	6	148	62	0	3	34	1.11
23365--23600	112	2.1	113	91	1	377	30	17	14	37	1.90
23452--23766	166	1.9	166	98	0	612	31	17	16	35	1.92
23365--23879	279	1.9	277	95	0	931	30	17	15	36	1.91
23616--24084	113	4.2	113	96	0	830	30	18	14	37	1.90
24639--25287	82	7.9	83	92	1	1047	36	20	13	29	1.91
24647--25291	165	3.9	166	94	1	1059	36	20	13	29	1.91
26371--26448	7	10.7	7	75	16	70	2	15	0	82	0.79
26375--26450	23	3.3	22	79	13	82	2	15	0	81	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26371--26451	34	2.4	34	85	8	103	2	16	0	81	0.80
26377--26448	24	2.8	26	79	8	85	2	15	0	81	0.79
37027--37052	13	2.0	13	100	0	52	69	7	0	23	1.14
39304--39449	3	48.7	3	95	0	265	64	0	1	34	1.02
39800--40027	112	2.0	113	97	0	431	24	15	19	40	1.90
42266--42443	91	2.0	91	100	0	356	33	17	22	25	1.96
42684--42719	19	1.9	18	88	5	54	13	19	5	61	1.52
48704--48730	2	13.5	2	100	0	54	48	0	0	51	1.00
49857--49882	5	5.2	5	100	0	52	80	19	0	0	0.71
50173--50203	2	15.5	2	93	0	53	3	48	0	48	1.17
62234--62372	30	4.6	30	72	3	100	38	15	18	27	1.91
63096--63131	14	2.6	14	95	0	63	47	0	2	50	1.15
64169--64234	28	2.4	28	97	0	123	43	36	7	12	1.70
66574--66634	32	1.9	32	90	6	97	31	13	29	26	1.93
67024--67096	21	3.6	21	72	7	78	20	19	26	34	1.96
67020--67121	40	2.5	41	96	1	188	18	19	24	37	1.94
67270--67303	17	2.0	17	100	0	68	23	23	23	29	1.99
69342--69373	15	2.0	17	88	11	50	34	15	0	50	1.45
69717--69792	37	2.1	37	82	5	91	32	42	9	15	1.79
71939--72096	78	2.0	78	100	0	316	44	19	16	18	1.86
76726--77067	124	2.8	125	81	7	371	42	20	14	23	1.88
78188--78231	21	2.1	21	86	0	61	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78803--78842	21	1.9	21	89	0	62	40	30	2	27	1.70
79036--79078	22	2.0	22	90	0	68	27	11	4	55	1.55
79511--79590	3	26.7	3	90	9	128	0	32	0	67	0.91
80474--80570	3	29.7	3	83	10	61	60	0	39	0	0.97
80494--80566	22	3.3	22	74	14	60	61	0	38	0	0.96
80513--80551	4	10.2	4	88	5	55	71	0	28	0	0.86
85909--86239	155	2.1	157	85	3	436	47	3	16	32	1.62
87453--87529	31	2.5	31	89	0	109	29	16	25	27	1.97
93818--93845	12	2.3	12	100	0	56	14	7	0	78	0.95
98287--98321	16	2.1	17	89	5	54	51	0	5	42	1.25
98970--99045	36	2.1	36	85	7	100	47	1	3	47	1.29
99191--99228	20	1.9	20	88	0	58	21	26	10	42	1.85
103601--103651	21	2.5	19	74	20	50	58	0	0	41	0.98
104432--104497	14	4.4	14	74	23	62	50	22	18	9	1.75
104432--104496	33	2.0	33	93	0	112	49	23	18	9	1.76
104521--104561	14	2.9	14	85	0	55	7	17	26	48	1.73
104907--104954	22	2.2	22	84	0	60	20	12	43	22	1.86
105070--105107	20	2.0	20	84	5	51	44	7	15	31	1.75
105157--105204	20	2.4	20	75	0	51	37	16	18	27	1.92
105186--105246	21	3.0	21	78	9	72	26	14	29	29	1.95
105193--105261	20	3.4	21	80	9	72	26	13	30	30	1.93
105226--105267	20	2.1	20	90	0	66	30	9	30	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109050--109090	21	1.9	22	85	5	57	34	7	36	21	1.82
109520--109890	122	3.0	121	81	8	460	47	4	10	37	1.57
109524--109896	126	3.0	122	78	9	414	47	4	10	38	1.57
111806--111934	23	5.6	23	76	6	111	33	23	22	20	1.97
111819--111937	45	2.6	46	80	5	134	34	23	21	20	1.97
111827--111947	23	5.5	22	76	4	95	34	23	21	19	1.96
115260--115290	2	15.5	2	100	0	62	51	0	0	48	1.00
119834--119932	49	2.0	50	94	2	173	48	5	9	37	1.57
124371--124599	93	2.5	91	89	1	332	36	22	15	24	1.94
124441--124499	22	2.8	21	79	7	66	40	28	18	11	1.86
124543--124590	21	2.3	21	77	0	51	37	25	20	16	1.93
124371--124619	91	2.7	92	89	1	338	36	22	16	24	1.94
130382--130428	22	2.1	22	96	0	85	40	2	0	57	1.11
130909--130940	2	16.0	2	93	0	55	46	0	3	50	1.17
141490--141582	37	2.5	38	87	3	134	27	22	18	31	1.97
142485--142556	30	2.4	30	77	11	76	31	20	8	38	1.83
151760--151785	2	13.0	2	100	0	52	50	0	0	50	1.00
152954--153050	35	2.8	35	84	1	124	40	27	2	29	1.68
153422--153571	80	1.9	80	98	0	291	32	14	11	42	1.80
156775--156854	35	2.3	35	88	0	115	42	23	1	32	1.62
156775--156869	35	2.7	35	85	3	102	42	25	2	30	1.67
157037--157323	147	1.9	148	90	0	459	36	6	9	48	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159162--159242	35	2.3	36	91	6	130	30	0	24	44	1.54
160421--160653	79	2.9	80	96	1	432	31	14	12	42	1.82
161856--161937	31	2.7	31	81	14	91	32	2	1	63	1.15
162322--162370	22	2.3	23	79	13	59	53	0	2	44	1.12
163379--163483	32	3.3	32	84	9	128	26	45	14	13	1.81
163769--163826	26	2.3	26	87	3	82	48	8	34	8	1.65
164434--164489	28	2.0	28	82	6	69	41	0	7	51	1.29
166401--166448	14	3.6	14	81	16	66	47	16	0	35	1.47
166400--166495	25	4.0	25	74	17	103	46	14	1	37	1.52
166418--166532	47	2.4	46	91	4	176	46	13	0	40	1.49
166465--166604	59	2.4	58	91	6	219	45	13	0	41	1.44
166526--166645	46	2.6	47	84	12	160	45	13	0	41	1.43
166416--166692	104	2.6	106	93	5	465	46	12	0	40	1.45
166776--166820	13	3.6	13	85	11	67	44	17	0	37	1.49
166774--166820	24	2.0	24	95	0	85	44	17	0	38	1.48
166774--166877	24	4.6	23	70	21	78	48	12	0	39	1.41
166774--166841	21	3.1	21	77	10	57	48	11	0	39	1.40
166798--167052	99	2.6	99	80	15	300	46	12	0	41	1.41
166898--167020	14	8.7	14	63	21	51	47	13	0	39	1.42
166892--167049	54	3.4	47	78	16	168	46	12	0	40	1.42
167126--167370	24	10.0	25	65	25	105	47	13	0	38	1.48
167142--167251	55	2.0	56	87	8	165	48	10	0	40	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167248--167299	25	2.2	24	89	6	79	48	13	0	38	1.43
167334--167383	24	2.1	23	82	14	57	52	10	0	38	1.35
167339--167464	56	2.3	55	87	9	177	46	13	0	40	1.43
169504--169549	18	2.4	18	85	10	56	15	21	4	58	1.54
169502--169551	20	2.5	18	79	20	55	14	20	4	62	1.47
174588--174662	33	2.3	33	97	0	141	9	17	48	25	1.77
175060--175099	15	2.5	15	88	8	53	75	12	7	5	1.18
176146--176188	21	2.0	21	100	0	86	20	23	13	41	1.88
179680--179735	27	2.0	28	86	10	80	41	17	10	30	1.84
180144--180407	60	4.4	60	81	3	271	17	21	26	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12