Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008425.1 Hibiscus syriacus cultivar Beakdansim tig00111208_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2340112

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1340 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2269147--2269211
28
2.3
28
86
0
85
27
15
13
43
1.85
2269374--2269602
40
5.5
39
65
17
113
24
32
16
26
1.96
2269414--2269645
43
5.5
42
71
10
170
25
30
17
26
1.97
2269366--2269647
83
3.4
83
90
0
420
25
31
16
26
1.97
2270435--2270467
14
2.4
14
94
0
57
84
9
6
0
0.76
2272882--2272908
13
2.1
13
100
0
54
11
29
14
44
1.80
2280991--2281044
14
3.9
14
79
13
67
61
14
1
22
1.43
2282358--2282400
22
1.9
23
86
13
63
51
9
0
39
1.34
2283116--2283163
22
2.2
22
85
7
62
62
6
2
29
1.31
2290711--2290751
20
2.1
20
86
4
57
63
12
4
19
1.46
2293701--2293770
30
2.3
30
85
0
95
52
5
17
24
1.65
2295508--2295556
20
2.5
20
87
9
66
55
4
12
28
1.55
2297049--2297102
10
5.3
10
77
18
58
87
9
3
0
0.67
2297047--2297109
27
2.2
30
83
8
87
80
14
4
0
0.86
2297049--2297102
22
2.5
22
81
3
74
87
9
3
0
0.67
2305301--2305334
17
2.0
17
100
0
68
35
23
17
23
1.95
2308549--2308601
25
2.1
25
86
6
72
56
0
7
35
1.28
2325785--2325839
24
2.3
24
93
0
92
27
30
21
20
1.98
2326279--2326303
12
2.1
12
100
0
50
24
28
16
32
1.96
2333949--2334014
29
2.2
30
83
2
89
34
1
7
56
1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!