genome.fa.s8430.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008430.1 Hibiscus syriacus cultivar Beakdansim tig00111220_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1186098

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 614 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255280--255394	27	4.3	27	94	1	205	29	20	38	11	1.88
257046--257096	22	2.3	22	80	12	61	35	5	5	52	1.50
262527--262571	2	23.5	2	86	8	67	48	0	2	48	1.13
265156--265220	23	2.8	22	70	9	58	40	3	3	53	1.32
265250--265283	16	2.1	16	88	0	50	35	14	8	41	1.77
271432--271473	18	2.3	18	95	4	75	71	4	0	23	1.05
271577--271943	38	10.1	37	76	13	311	44	6	4	45	1.48
271642--271943	72	4.1	72	82	11	321	43	6	3	46	1.48
271525--271954	34	12.1	35	75	14	266	44	6	3	44	1.49
272617--273545	165	5.6	163	89	2	1295	24	20	24	29	1.99
272617--273547	84	11.3	80	78	6	812	24	20	25	29	1.99
276136--276164	15	1.9	15	100	0	58	82	0	0	17	0.66
278509--278549	18	2.3	18	91	8	66	73	2	0	24	0.96
278553--278616	2	31.0	2	86	12	85	48	4	1	45	1.32
278630--279085	38	12.6	37	77	11	364	44	7	3	44	1.48
279072--279118	2	24.0	2	91	4	69	55	0	0	44	0.99
279093--279126	17	2.0	17	88	0	50	67	2	0	29	1.05
279234--279268	16	2.1	17	89	5	54	25	2	2	68	1.17
282275--282309	2	17.5	2	100	0	70	51	0	0	48	1.00
283315--283350	19	1.9	19	88	5	56	58	13	13	13	1.64
286703--286748	23	2.0	24	91	4	76	19	26	21	32	1.97
288379--288418	20	2.1	19	86	13	55	30	10	7	52	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290808--290838	13	2.5	12	90	10	53	16	9	12	61	1.56
300429--300533	50	2.1	50	100	0	210	34	27	9	28	1.88
303630--303713	31	2.7	31	86	1	105	35	5	11	46	1.65
306363--306406	21	2.1	21	82	0	52	36	13	2	47	1.56
306432--306478	21	2.2	21	92	0	76	65	10	8	14	1.45
310575--310736	81	2.0	81	95	0	288	16	19	27	37	1.92
318243--318321	35	2.4	33	83	8	90	11	16	1	70	1.22
318243--318322	32	2.5	32	82	11	92	11	17	1	70	1.23
319880--319929	26	2.0	25	88	11	75	68	4	14	14	1.36
321896--321936	13	3.2	13	86	6	57	68	0	2	29	1.03
321894--321936	12	3.5	12	81	6	50	65	0	2	32	1.06
322061--322090	4	7.5	4	92	0	51	26	0	26	46	1.53
322858--322895	20	1.9	20	100	0	76	34	10	39	15	1.82
324172--324217	19	2.4	19	92	0	74	23	2	2	71	1.08
324856--324905	20	2.5	20	76	3	55	24	32	26	18	1.97
325201--325233	15	2.2	15	100	0	66	39	0	27	33	1.57
330687--330730	21	2.1	21	83	8	54	25	0	25	50	1.50
333414--333443	8	3.6	8	91	8	51	36	0	0	63	0.95
336312--336411	49	2.0	50	96	1	184	30	13	24	33	1.93
338290--338337	22	2.0	25	84	15	66	52	0	0	47	1.00
338305--338347	16	2.8	16	82	3	52	46	0	0	53	1.00
348211--348235	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348708--348754	16	2.8	17	78	12	53	46	0	0	53	1.00
352313--352350	2	19.0	2	100	0	76	50	0	0	50	1.00
361570--361621	20	2.5	21	84	3	70	38	19	23	19	1.93
361610--361677	20	3.3	20	74	11	75	35	25	17	22	1.95
361858--361891	12	2.9	12	86	4	52	17	41	5	35	1.74
362445--362498	24	2.2	24	90	0	81	22	16	20	40	1.91
362673--362697	12	2.1	12	100	0	50	72	0	28	0	0.86
364990--365120	19	7.7	19	67	23	103	42	19	23	14	1.88
364990--365116	33	3.8	33	90	4	211	42	18	23	14	1.88
364991--365123	66	2.0	66	97	0	248	41	18	23	16	1.90
365131--365187	14	3.7	14	75	20	60	8	22	22	45	1.80
365145--365205	19	3.5	19	70	21	60	11	21	21	45	1.82
365116--365205	33	2.7	33	91	0	144	13	21	21	44	1.85
365312--365348	14	2.6	14	91	0	65	45	24	0	29	1.53
366697--366763	21	3.2	21	68	4	55	19	20	35	23	1.95
367037--367221	91	2.0	90	89	6	282	47	18	11	22	1.81
368907--368967	20	3.1	19	79	9	68	44	18	24	13	1.85
368932--369016	33	2.5	33	96	1	152	38	23	27	10	1.87
372794--372875	29	2.8	29	94	1	137	32	14	9	42	1.79
377558--377639	29	2.8	29	94	1	137	32	14	9	42	1.79
381103--381182	34	2.5	31	81	8	88	38	0	1	60	1.05
381323--381376	17	3.2	17	72	0	54	31	0	3	64	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382957--383029	21	3.5	21	87	7	103	17	34	26	21	1.96
383573--383598	12	2.2	12	100	0	52	69	0	0	30	0.89
383558--383659	34	3.0	34	84	4	134	52	3	2	40	1.35
384009--384755	128	5.8	128	95	0	1352	32	21	24	22	1.98
384836--384876	8	5.2	8	82	5	57	36	29	0	34	1.58
389070--389131	26	2.2	28	83	11	74	25	3	0	70	1.02
404405--404521	35	3.3	35	85	2	162	23	22	18	35	1.96
423265--423344	33	2.4	34	91	4	128	38	15	15	31	1.88
428493--428565	37	2.0	37	94	0	128	28	21	12	36	1.90
428754--429011	83	3.1	83	82	3	290	31	25	18	24	1.98
429356--429425	14	4.8	15	73	18	58	28	1	0	70	0.96
429357--429422	27	2.4	27	83	16	84	28	1	0	69	0.97
429476--429541	33	2.0	33	90	0	105	43	18	9	28	1.80
429482--429556	33	2.3	33	86	4	98	40	16	13	30	1.86
429927--429976	24	2.1	24	81	7	57	30	0	0	70	0.88
436855--437002	67	2.3	64	87	6	217	31	29	24	14	1.95
436967--437003	18	2.1	18	94	0	65	27	37	27	8	1.84
437482--437785	149	2.0	149	99	0	599	27	16	20	35	1.94
437764--437808	23	2.0	23	86	0	63	20	24	28	26	1.99
443847--443889	21	2.0	21	81	0	50	30	30	25	13	1.94
443869--444019	67	2.2	68	91	2	243	30	29	25	14	1.95
444500--444803	149	2.0	149	98	0	590	27	16	19	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444782--444826	23	2.0	23	86	0	63	20	24	28	26	1.99
449213--449273	22	2.9	22	90	4	90	26	21	22	29	1.99
449408--449448	16	2.6	16	96	0	73	46	19	0	34	1.50
454420--454458	20	2.0	20	89	0	60	51	0	2	46	1.14
455075--455201	59	2.1	60	82	4	150	34	15	18	30	1.93
455551--455582	2	16.0	2	100	0	64	50	0	0	50	1.00
455605--455730	59	2.1	60	80	10	143	51	3	14	30	1.58
461602--461677	40	1.9	40	91	0	125	48	1	0	50	1.09
465491--465520	15	2.1	15	93	6	53	33	0	0	66	0.92
475895--475936	20	2.1	20	95	0	75	33	26	4	35	1.77
478924--478971	2	24.0	2	100	0	96	50	0	0	50	1.00
483759--483802	20	2.2	20	87	0	61	36	2	15	45	1.59
488365--488409	20	2.2	20	80	0	54	37	2	13	46	1.55
494736--495267	4	133.0	4	100	0	1064	50	25	0	25	1.50
495303--495405	38	2.8	37	86	2	136	46	5	5	41	1.52
495307--495540	35	6.4	36	74	11	149	46	4	6	42	1.50
495309--495459	36	4.1	36	81	4	151	47	4	6	41	1.50
495563--495638	35	2.1	36	83	9	93	46	2	3	47	1.35
495681--495722	14	2.9	15	85	3	59	21	2	0	76	0.90
498662--498706	19	2.4	19	92	3	74	11	13	8	66	1.44
502057--502825	84	9.2	83	82	4	843	29	24	21	24	1.99
502048--502825	334	2.3	333	85	2	1076	29	25	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502035--502825	249	3.2	252	90	2	1211	29	25	21	24	1.99
503467--503569	38	2.8	37	86	2	136	46	5	5	41	1.52
503471--503705	36	6.4	36	72	12	142	46	4	6	42	1.50
503473--503623	36	4.1	36	81	4	151	47	4	6	41	1.50
503840--503881	14	2.9	15	85	3	59	21	2	0	76	0.90
505454--506029	4	144.0	4	99	0	1089	48	25	1	25	1.58
518992--519022	3	10.3	3	92	0	53	64	0	0	35	0.94
520217--520280	34	1.9	32	84	6	83	23	28	17	31	1.97
520651--520727	21	3.7	21	91	1	111	32	16	27	23	1.96
520747--520825	21	3.8	21	86	1	106	22	17	35	24	1.95

Tables:   1   2   3   4   5   6