genome.fa.s8439.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008439.1 Hibiscus syriacus cultivar Beakdansim tig00111238_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2703160

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1013 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2521020--2521164	60	2.5	58	82	3	175	37	19	3	40	1.69
2521316--2521434	60	2.0	60	83	3	150	37	3	22	36	1.71
2521313--2521475	60	2.7	60	77	10	147	38	4	20	36	1.74
2531808--2531838	2	15.5	2	100	0	62	0	48	0	51	1.00
2538292--2538387	40	2.4	41	86	11	137	42	20	17	18	1.89
2538292--2538382	20	4.6	19	83	6	85	42	20	17	18	1.89
2538580--2538652	20	3.7	20	70	7	67	38	17	19	24	1.93
2538836--2538934	20	4.8	21	69	13	71	24	14	28	33	1.94
2543235--2543282	23	2.1	23	88	7	71	45	6	2	45	1.40
2546035--2546134	15	6.9	15	68	11	55	40	4	41	15	1.65
2554914--2554987	37	2.0	36	87	7	105	52	4	0	43	1.20
2565370--2565413	18	2.6	17	92	7	72	40	4	25	29	1.75
2565984--2566076	37	2.5	37	91	1	141	37	38	12	10	1.79
2566462--2566540	34	2.4	33	85	6	115	41	36	8	12	1.74
2566245--2566743	239	2.0	244	89	6	765	38	27	11	22	1.89
2567891--2567935	21	2.1	21	95	0	81	15	35	13	35	1.87
2571211--2571361	60	2.5	60	85	6	200	33	15	17	33	1.92
2574409--2574451	22	2.0	22	85	0	59	39	2	11	46	1.53
2576256--2576434	15	11.5	15	83	8	214	46	0	1	51	1.10
2576378--2576479	22	4.5	22	72	9	96	40	0	6	52	1.28
2576256--2576612	52	7.1	51	79	14	222	41	0	6	51	1.30
2576468--2576520	14	3.5	14	72	18	52	37	0	5	56	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2576459--2576685	32	7.0	32	73	16	173	35	0	10	53	1.39
2576482--2576538	18	3.4	18	69	18	59	33	0	12	54	1.38
2576632--2576684	14	3.5	14	72	18	52	37	0	5	56	1.23
2579781--2579807	6	4.5	6	100	0	54	29	33	0	37	1.58
2581545--2581595	17	2.9	18	85	5	77	35	23	9	31	1.87
2582135--2582185	22	2.4	21	90	6	84	58	3	7	29	1.44
2582138--2582180	22	2.0	22	100	0	86	55	4	9	30	1.52
2590522--2590589	34	2.0	34	100	0	136	23	29	5	41	1.78
2599494--2599618	60	2.1	60	86	5	173	45	16	4	32	1.69
2599704--2599734	2	16.0	2	93	6	55	48	0	0	51	1.00
2601636--2601664	2	14.5	2	100	0	58	48	0	0	51	1.00
2607440--2607498	29	2.0	29	100	0	118	49	13	13	23	1.78
2622134--2622205	23	3.2	22	82	7	85	43	1	29	26	1.63
2622118--2622205	46	2.0	44	82	8	106	44	2	31	21	1.65
2631198--2631346	60	2.5	60	79	5	167	36	5	24	33	1.78
2636744--2636772	6	5.0	6	91	8	51	48	0	0	51	1.00
2636744--2636782	12	3.3	11	89	10	51	43	2	0	53	1.14
2637340--2637367	2	14.0	2	100	0	56	50	0	0	50	1.00
2637642--2637679	20	1.9	20	88	0	58	57	0	0	42	0.98
2643492--2643550	29	2.0	29	93	0	100	49	13	13	23	1.78
2647795--2648595	400	2.0	399	98	0	1557	44	15	13	27	1.84
2648567--2648625	29	2.0	29	96	0	109	50	13	11	23	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2669793--2669869	33	2.3	33	93	0	127	32	7	32	27	1.85
2683373--2683397	2	12.5	2	100	0	50	48	0	0	52	1.00
2688144--2688189	21	2.2	21	100	0	92	28	8	30	32	1.87
2691517--2691549	2	16.5	2	100	0	66	48	0	0	51	1.00
2693130--2693196	33	2.0	33	91	0	107	41	0	10	47	1.38
2695635--2695680	23	2.0	23	95	0	83	13	23	26	36	1.91
2695650--2695739	16	5.2	16	65	15	54	10	26	24	38	1.87
2695651--2695739	35	2.5	35	87	3	126	10	26	23	39	1.87
2697143--2697224	36	2.3	36	79	10	89	69	0	6	24	1.11

Tables:   1   2   3   4   5   6   7   8   9

The End!