genome.fa.s8445.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008445.1 Hibiscus syriacus cultivar Beakdansim tig00111250_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  899959

Tables:   1   2   3   4   

This is table  2  of  4  ( 469 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192065--192242	71	2.5	71	83	1	196	33	20	17	28	1.95
192207--192261	21	2.7	19	86	11	65	41	21	20	16	1.90
193886--193935	24	2.1	24	85	7	66	54	2	0	44	1.11
193889--193941	20	2.7	20	77	13	56	56	1	0	41	1.10
193896--193941	20	2.3	20	82	14	60	56	0	0	43	0.99
194675--194834	32	5.1	32	96	1	279	30	3	15	51	1.60
197790--197972	82	2.2	82	80	7	194	31	18	18	31	1.95
197828--198224	82	4.8	83	86	4	477	27	21	19	31	1.97
197843--198224	42	9.2	42	86	5	494	27	21	18	31	1.97
197843--198224	124	3.1	124	90	2	563	27	21	18	31	1.97
202150--202373	43	5.2	42	82	4	243	24	21	20	33	1.97
205231--205262	2	16.0	2	100	0	64	50	0	0	50	1.00
205765--205807	18	2.5	17	85	7	61	67	2	4	25	1.22
206164--206268	37	2.8	37	85	0	138	29	14	14	41	1.85
206810--207471	105	6.3	105	88	3	870	22	18	25	33	1.97
207640--207715	36	2.1	36	90	0	116	40	15	21	22	1.90
207615--207934	106	3.1	104	90	4	479	37	12	19	30	1.89
207837--207911	39	1.9	39	83	5	98	38	13	20	28	1.90
208051--208164	36	3.2	36	73	2	113	43	14	16	25	1.85
208005--208180	72	2.4	74	83	7	207	42	13	18	26	1.87
209316--209852	183	2.9	183	97	0	986	30	21	20	27	1.98
214606--214667	28	2.2	28	83	11	74	74	0	3	22	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214607--214675	19	3.6	19	77	13	70	73	0	2	23	0.96
214917--214959	18	2.5	17	81	7	52	67	4	4	23	1.28
215316--215420	37	2.8	37	82	0	129	28	14	15	41	1.86
223835--223877	21	2.0	21	90	0	68	32	27	23	16	1.96
224425--224742	103	3.1	103	96	0	600	26	11	24	36	1.90
230839--230881	21	2.0	21	90	0	68	32	23	23	20	1.98
254949--255022	26	2.8	26	95	0	130	33	18	22	24	1.97
263520--263568	19	2.7	17	84	9	53	26	20	28	24	1.99
263588--263636	19	2.6	19	87	6	64	24	20	24	30	1.98
265617--265671	21	2.6	21	97	0	101	38	25	12	23	1.90
278057--278084	10	2.8	10	100	0	56	67	0	0	32	0.91
281438--281595	29	5.5	29	77	3	113	39	16	20	22	1.92
285285--285394	45	2.5	45	87	1	141	29	27	10	32	1.91
285301--285394	45	2.1	45	91	0	152	29	25	12	31	1.93
287151--287490	168	2.0	170	93	4	589	31	12	13	43	1.80
288757--288862	52	2.0	52	100	0	212	36	13	16	33	1.88
305121--305179	18	3.1	18	75	15	64	55	0	1	42	1.09
305114--305188	22	3.6	21	74	15	84	56	0	1	42	1.08
305095--305179	40	2.0	42	88	8	138	55	0	1	43	1.07
305376--305426	22	2.3	22	86	0	66	50	5	9	33	1.59
307466--307515	21	2.4	21	100	0	100	50	12	22	16	1.77
309535--309585	27	2.0	24	88	11	75	47	9	5	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317518--317654	65	2.1	65	89	5	206	29	19	22	27	1.98
319885--319952	2	34.5	2	97	2	129	50	0	0	50	1.00
320367--320457	23	4.2	22	72	14	73	29	19	24	26	1.98
326084--326236	65	2.4	65	84	6	177	32	18	19	30	1.96
327207--327252	22	2.1	22	91	0	74	32	23	19	23	1.97
328616--328663	21	2.5	19	86	10	62	27	12	14	45	1.81
329157--329210	20	2.7	20	94	2	90	33	42	11	12	1.79
335238--335286	16	3.1	16	100	0	98	24	42	6	26	1.78
334804--335713	468	1.9	464	87	2	1227	32	22	16	28	1.96
340154--340196	14	3.0	15	84	15	56	60	0	0	39	0.97
340736--341255	249	2.1	245	90	2	824	37	17	15	28	1.91
341246--341302	28	2.0	28	100	0	114	22	28	10	38	1.87
342762--342842	40	2.0	40	100	0	162	22	19	9	48	1.78
343395--343448	14	3.8	14	75	20	58	55	0	0	44	0.99
343566--344287	76	9.5	76	92	3	1186	35	20	20	23	1.96
343566--344287	151	4.7	152	92	4	1186	35	20	20	23	1.96
343566--344287	382	1.9	381	94	2	1279	35	20	20	23	1.96
347578--347882	84	3.6	84	92	3	515	37	22	13	27	1.91
356570--356607	11	3.5	11	85	7	51	0	13	2	84	0.73
356563--356607	17	2.6	17	86	6	65	2	13	4	80	0.97
357066--357119	14	3.8	14	75	20	58	55	0	0	44	0.99
357185--358167	81	12.1	80	88	1	1318	31	21	12	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358547--358586	6	6.7	6	100	0	80	0	32	15	52	1.43
362488--362528	1	41.0	1	85	0	55	92	0	7	0	0.38
362490--362530	20	2.0	20	90	0	64	90	0	9	0	0.46
362488--362530	14	3.1	14	93	0	68	90	0	9	0	0.45
367191--367265	3	24.7	3	89	2	87	58	0	0	41	0.98
367506--367561	17	3.2	17	69	18	51	17	23	8	50	1.74
367489--368153	113	5.9	112	87	5	889	30	18	15	35	1.92
367489--368153	229	3.0	225	86	5	963	30	18	15	35	1.92
368856--369260	115	3.6	115	93	3	661	33	19	13	33	1.91
369173--369433	83	3.1	83	92	2	452	37	19	12	29	1.89
370577--370660	19	4.5	19	78	12	102	0	17	0	82	0.68
370577--370656	11	7.2	11	78	12	83	0	16	0	83	0.64
370576--370656	28	2.9	28	79	20	98	0	17	0	82	0.66
370588--370659	17	4.4	16	79	19	78	0	16	0	83	0.65
370577--370656	29	2.9	28	82	16	103	0	16	0	83	0.64
370578--370655	7	10.9	7	78	19	81	0	16	0	83	0.65
377959--377990	15	2.1	15	94	0	55	46	9	18	25	1.79
381227--381290	24	2.7	24	83	9	78	57	1	4	35	1.29
381925--381972	11	4.6	11	82	15	50	52	0	0	47	1.00
381958--382008	25	2.0	26	88	11	79	62	3	0	33	1.13
383386--383457	3	23.7	3	85	2	81	58	0	0	41	0.98
386515--387358	55	15.3	55	90	0	1267	35	11	18	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387599--387736	47	2.9	49	80	3	172	28	13	25	32	1.94
392451--392505	17	3.1	17	82	14	74	20	21	29	29	1.98
395109--396313	55	22.2	55	74	11	864	36	10	18	34	1.85
395124--395697	267	2.1	269	84	5	725	36	10	18	33	1.86
395860--395946	45	1.9	45	80	0	102	32	11	18	37	1.86
395954--396257	167	1.8	168	82	6	393	38	10	16	34	1.83
396696--396790	46	2.1	46	81	0	109	44	14	18	22	1.86
398369--398463	46	2.1	46	81	0	109	44	14	18	22	1.86
399060--399101	13	3.2	13	82	0	57	28	21	16	33	1.95
401855--401944	45	2.0	45	82	0	108	43	14	18	23	1.87
402525--402580	23	2.4	23	85	8	69	26	23	17	32	1.97
403766--404094	166	2.0	164	98	1	640	35	14	24	25	1.93
416105--416130	3	8.7	3	100	0	52	0	0	30	69	0.89
417322--417365	17	2.6	17	96	0	79	47	13	13	25	1.79
418815--418854	14	2.9	14	88	7	55	22	0	7	70	1.12
424438--424728	79	3.7	78	82	4	343	38	16	20	24	1.93
424461--424675	78	2.7	78	92	2	333	40	16	18	25	1.90
426127--426557	95	4.6	94	84	8	508	41	13	22	23	1.88
426218--426557	185	1.9	180	91	3	554	41	12	22	23	1.88
426215--426557	90	3.7	94	87	5	506	41	13	22	23	1.89
426670--426766	36	2.7	36	91	0	158	38	16	21	23	1.93
432402--432512	53	2.1	53	93	0	186	37	18	17	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437354--437463	53	2.1	53	91	0	175	37	17	19	26	1.93
439366--439411	21	2.2	21	84	7	58	43	4	21	30	1.72
439382--439428	21	2.2	21	88	0	67	34	8	25	31	1.86
447124--447228	37	2.8	37	82	0	129	40	14	13	32	1.84
447623--447652	2	15.5	2	93	6	53	46	0	0	53	1.00
447620--447679	6	9.0	7	78	10	56	38	0	0	61	0.96
447645--447679	10	3.7	10	88	11	56	31	0	0	68	0.90
447945--447982	18	2.2	17	86	13	51	21	0	0	78	0.74
447948--447997	8	5.9	9	81	6	52	22	2	0	76	0.89
447895--447998	22	4.6	22	69	22	65	26	2	1	68	1.14

Tables:   1   2   3   4