genome.fa.s8445.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008445.1 Hibiscus syriacus cultivar Beakdansim tig00111250_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  899959

Tables:   1   2   3   4   

This is table  3  of  4  ( 469 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
449280--449316	19	1.9	19	89	10	58	8	24	0	67	1.17
451105--451136	4	8.2	4	93	6	57	50	25	25	0	1.50
453337--453384	22	2.2	22	100	0	96	35	25	14	25	1.94
454351--455618	106	12.0	106	91	1	1902	34	24	17	22	1.96
456368--456471	36	2.8	37	82	2	129	40	14	12	32	1.83
456969--457015	2	23.5	2	100	0	94	48	0	0	51	1.00
457035--457060	13	2.0	13	100	0	52	23	7	0	69	1.14
457348--457393	19	2.5	19	83	13	60	17	8	0	73	1.07
465683--466040	139	2.6	139	84	1	466	25	20	17	35	1.95
465972--466447	135	3.6	134	85	5	616	26	24	14	34	1.94
465827--466445	275	2.3	257	81	7	661	26	23	15	34	1.95
467412--467546	42	3.2	42	80	3	139	32	19	20	28	1.96
467490--467546	20	2.8	19	73	21	53	31	22	17	28	1.97
467779--467928	42	3.6	42	79	4	126	32	22	20	26	1.98
468002--468215	53	4.1	50	77	13	182	41	18	9	29	1.83
467971--468190	53	4.1	53	80	9	216	40	20	9	30	1.83
468211--468416	39	5.3	39	87	1	261	35	15	15	33	1.89
468464--468558	36	2.6	36	93	0	154	42	15	21	21	1.89
468650--468796	37	4.2	37	71	19	116	40	8	17	34	1.79
468525--468763	66	3.6	65	80	7	225	40	10	16	32	1.82
468748--468836	37	2.4	36	82	12	101	38	8	16	35	1.81
468784--468853	37	1.9	36	83	13	90	37	14	12	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
468978--469071	37	2.5	35	79	14	91	42	8	17	31	1.79
468918--469276	103	3.5	103	85	3	467	39	9	17	33	1.82
481121--481180	24	2.5	24	86	0	84	38	18	16	26	1.92
484674--484766	42	2.2	41	83	5	116	40	11	19	27	1.86
484691--484761	22	3.3	22	66	15	58	38	12	21	28	1.90
485526--485599	20	3.5	20	72	25	64	72	2	5	18	1.15
485655--485707	23	2.3	22	73	20	54	75	0	5	18	0.99
485749--485791	18	2.4	18	92	0	68	72	0	6	20	1.08
486990--487593	270	2.2	270	90	0	949	26	17	21	34	1.95
490421--490476	29	1.9	29	85	0	76	51	8	14	25	1.70
491538--491567	16	1.9	16	93	6	53	80	3	3	13	0.97
491643--491681	18	2.2	18	90	0	60	71	0	7	20	1.10
492502--492723	26	9.5	25	66	23	126	43	10	23	22	1.84
492540--492711	20	7.7	20	67	21	92	42	11	25	21	1.85
492522--492723	46	4.4	46	87	0	314	43	10	23	22	1.84
492879--492990	55	2.0	55	86	3	154	39	8	17	34	1.80
493142--493327	81	2.3	80	85	1	246	36	9	22	31	1.86
493422--493464	2	21.5	2	100	0	86	48	0	0	51	1.00
495735--495818	32	2.7	31	75	14	82	14	27	29	28	1.95
500789--502562	263	6.7	262	78	9	1671	38	10	15	35	1.82
501045--502562	794	1.9	796	81	7	1868	38	10	15	35	1.82
503465--503501	19	1.9	19	94	0	65	32	24	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503545--503598	21	2.6	20	82	8	63	27	18	20	33	1.96
503586--503638	20	2.7	20	96	0	97	39	18	20	20	1.92
503627--503732	20	5.2	20	82	10	135	29	27	19	23	1.98
503881--503950	22	3.2	22	89	0	104	22	38	12	25	1.90
503891--503959	22	3.2	21	85	4	77	21	34	14	28	1.93
504348--504398	20	2.5	20	93	0	84	13	13	21	50	1.76
504362--504405	20	2.2	20	91	0	70	11	13	20	54	1.69
506399--506560	20	8.4	20	77	13	135	37	24	18	19	1.94
506569--506605	19	1.9	19	94	0	65	5	13	29	51	1.63
506589--506669	33	2.4	34	85	2	110	16	20	22	40	1.91
507176--507283	21	5.1	21	73	8	94	19	36	19	25	1.95
507176--507287	42	2.7	41	80	8	127	19	37	18	24	1.94
508588--508653	30	2.2	30	86	2	87	34	1	18	45	1.59
508599--508664	30	2.2	30	91	0	114	30	1	15	53	1.51
508637--508751	54	2.1	54	85	3	160	33	2	15	48	1.59
508814--509051	20	12.9	20	70	15	136	23	20	21	34	1.96
508770--508935	73	2.3	74	83	1	208	22	19	20	36	1.95
508831--509043	54	4.0	54	90	0	320	22	21	21	35	1.96
512371--512538	20	8.3	20	77	7	169	23	20	26	29	1.99
512371--512538	41	4.2	40	77	8	178	23	20	26	29	1.99
512371--512559	61	3.1	61	89	0	288	22	20	26	29	1.99
512548--512600	20	2.7	20	90	0	79	18	18	18	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515338--515375	20	1.9	20	100	0	76	15	15	26	42	1.87
520019--520053	2	17.5	2	93	0	61	48	0	2	48	1.16
551595--551642	22	2.2	21	82	10	53	16	4	22	56	1.58
552386--552467	43	1.9	43	92	0	137	25	9	31	32	1.88
553472--553520	21	2.4	21	86	3	73	32	26	18	22	1.97
554064--554240	90	2.0	90	92	2	293	38	10	4	46	1.59
554993--555052	20	2.9	21	80	5	86	38	18	20	23	1.93
555595--555771	90	2.0	90	93	2	302	38	10	5	46	1.60
557418--557485	22	3.1	22	95	0	118	35	19	22	23	1.96
560412--560726	84	3.8	83	82	5	350	24	18	23	34	1.96
560791--561189	124	3.2	124	90	0	636	27	19	22	30	1.98
561998--562032	11	2.9	12	91	8	54	2	14	0	82	0.77
562000--562034	18	1.9	18	94	0	61	2	14	0	82	0.77
567485--569079	797	2.0	795	97	0	2976	23	21	21	34	1.97
574901--574951	20	2.5	20	90	0	84	33	13	21	31	1.92
578035--578233	29	6.9	29	85	3	233	28	10	15	46	1.77
588017--588042	13	2.0	13	100	0	52	38	7	23	30	1.83
588351--588393	16	2.8	15	82	6	59	51	0	0	48	1.00
593348--593377	15	2.0	15	100	0	60	46	0	6	46	1.29
595618--595800	101	1.8	102	86	1	269	31	29	18	21	1.96
599979--600015	17	2.3	16	90	9	58	54	27	0	18	1.44
609894--609958	29	2.2	29	100	0	130	38	15	23	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623355--623511	63	2.5	62	80	9	174	31	18	24	26	1.98
624602--624667	2	33.0	2	93	6	116	50	0	1	48	1.10
625183--625263	23	3.5	23	88	3	119	22	25	22	29	1.99
632640--632796	65	2.4	64	82	5	183	26	19	23	30	1.98
635004--635042	13	3.1	13	88	3	53	48	2	7	41	1.45
640834--641010	65	2.7	63	80	9	162	27	19	24	28	1.98
640854--641016	65	2.5	64	83	7	197	27	19	22	30	1.98
640898--641063	65	2.6	62	79	11	158	25	18	23	32	1.97
641842--641907	30	2.2	30	83	5	80	42	4	13	39	1.65
644634--644688	2	27.5	2	100	0	110	50	0	0	49	1.00
645163--645246	23	3.7	23	88	3	125	22	22	22	32	1.98
655020--655058	13	3.1	13	88	3	53	48	2	7	41	1.45
660882--661044	65	2.5	64	81	7	188	27	18	22	31	1.97
660926--661091	65	2.6	62	78	11	149	25	18	23	33	1.97
661871--661936	30	2.2	30	83	5	80	42	4	13	39	1.65
664856--664927	20	3.6	20	90	0	108	33	12	11	43	1.78
665548--665599	21	2.5	20	81	3	59	28	21	13	36	1.91
665654--665712	20	3.0	20	78	9	66	28	10	15	45	1.78
665651--665744	40	2.3	41	80	8	104	28	10	14	45	1.79
665739--665776	20	1.9	20	94	0	67	28	18	7	44	1.78
670051--670107	26	2.2	26	83	0	78	22	17	24	35	1.95
673144--673302	85	1.9	85	100	0	318	33	23	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
673370--673403	17	1.9	18	88	5	52	35	17	8	38	1.81
673604--673804	59	3.4	58	75	10	219	29	22	9	38	1.86
673639--673862	58	3.8	59	75	8	215	29	23	9	36	1.87
673614--673863	117	2.1	117	91	0	401	30	23	9	36	1.87
674236--674283	19	2.6	18	83	9	62	27	27	18	27	1.98
680036--680075	21	1.9	21	85	10	55	37	7	27	27	1.84
680037--680078	14	3.0	14	86	6	50	38	9	26	26	1.87
680524--680557	17	1.9	18	88	5	52	35	17	8	38	1.81
680675--681032	59	6.1	58	70	13	259	30	23	10	35	1.89
680799--681022	58	3.8	59	75	8	215	29	23	9	36	1.87

Tables:   1   2   3   4