genome.fa.s8445.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008445.1 Hibiscus syriacus cultivar Beakdansim tig00111250_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  899959

Tables:   1   2   3   4   

This is table  1  of  4  ( 469 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11991--12036	22	2.0	23	83	4	58	32	6	0	60	1.22
20879--20952	35	2.1	35	90	2	114	33	28	28	9	1.88
21028--21102	24	3.2	24	88	1	116	36	21	17	25	1.95
21032--21108	23	3.3	23	85	3	109	36	20	18	24	1.95
21011--21124	47	2.4	47	79	5	124	40	19	14	25	1.90
22253--22286	17	2.0	17	88	0	50	32	17	0	50	1.47
23601--23646	18	2.6	18	100	0	92	8	21	52	17	1.71
23580--23624	13	3.3	13	90	6	63	17	22	42	17	1.89
45321--46574	106	11.8	106	92	0	1954	34	24	17	23	1.96
47481--47585	37	2.8	37	84	2	140	39	14	15	31	1.87
48135--48268	9	13.6	10	66	21	52	23	7	2	67	1.28
48224--48264	11	3.6	11	87	6	55	24	4	4	65	1.32
48497--48523	2	13.5	2	100	0	54	48	0	0	51	1.00
48883--48955	39	1.9	37	81	10	85	20	12	2	64	1.39
53485--53545	15	4.0	15	80	4	59	80	4	14	0	0.87
53483--53571	24	3.6	25	77	15	80	78	5	14	1	0.98
53496--53545	15	3.3	15	83	5	64	84	4	12	0	0.76
53495--53571	7	10.9	7	78	8	59	80	5	12	1	0.94
54174--54246	22	3.3	22	88	3	103	39	30	15	15	1.87
55075--56555	106	14.0	106	88	3	1968	33	24	17	23	1.96
57285--57389	37	2.8	37	88	0	156	40	14	14	31	1.86
58001--58043	13	3.6	12	78	9	52	32	0	2	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58063--58103	11	3.6	11	87	6	55	24	4	4	65	1.32
58112--58148	2	18.5	2	100	0	74	48	0	0	51	1.00
58602--58739	27	5.1	26	68	22	65	21	4	2	72	1.13
58657--58754	30	3.3	29	75	13	76	17	5	3	74	1.13
58695--58759	28	2.4	27	76	16	64	15	7	3	73	1.18
64535--64684	45	3.4	45	91	4	234	35	10	24	29	1.89
76427--76778	138	2.5	139	78	5	390	45	13	13	28	1.81
76802--76848	23	2.0	23	95	0	85	57	4	6	31	1.43
77056--77111	29	1.9	29	82	7	69	62	3	12	21	1.45
79504--79583	41	1.9	42	85	7	110	45	23	10	21	1.82
79504--79556	21	2.6	21	81	3	72	47	24	9	18	1.78
79506--79586	20	3.9	20	74	11	74	43	22	9	24	1.83
79568--79757	20	9.5	20	77	10	149	30	22	10	36	1.88
79547--79757	40	5.2	39	76	7	174	30	22	10	36	1.89
79549--79757	60	3.5	59	79	12	203	30	22	11	36	1.89
79845--79875	16	1.9	16	93	0	53	16	41	19	22	1.89
80264--80321	19	3.3	19	64	26	54	50	20	15	13	1.78
80251--80325	34	2.2	33	90	2	114	46	25	13	14	1.81
80318--80355	20	1.9	20	89	10	60	31	18	18	31	1.95
81942--82258	20	15.9	20	76	4	257	41	11	21	26	1.86
82272--82365	19	4.7	20	79	6	84	24	14	25	35	1.94
82263--82359	41	2.4	40	81	8	117	25	15	24	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82337--82382	19	2.4	19	100	0	92	34	17	21	26	1.95
85779--85897	45	2.6	45	95	0	211	33	11	10	43	1.76
91052--91393	86	4.0	86	91	0	540	31	26	20	21	1.97
91502--91789	82	3.4	83	81	3	292	35	20	18	26	1.95
91502--91918	82	4.9	86	78	5	260	36	19	18	26	1.94
92532--92580	22	2.2	23	81	3	55	36	4	6	53	1.45
92543--92596	22	2.4	22	82	11	65	35	3	7	53	1.47
93787--93921	45	3.0	45	92	0	216	31	11	11	45	1.76
102047--102118	3	23.3	3	80	18	69	70	0	1	27	0.95
102126--102307	40	4.8	40	79	11	172	48	5	3	42	1.44
102267--102334	27	2.5	27	92	0	109	47	5	5	41	1.52
102294--102378	37	2.2	38	91	4	136	42	5	7	44	1.55
103001--103969	84	11.6	84	78	5	890	25	20	24	29	1.99
103003--103946	169	5.6	168	83	4	1041	25	20	24	29	1.99
103005--103953	503	1.9	501	83	3	1255	25	20	24	30	1.99
109189--109214	2	13.0	2	100	0	52	50	0	0	50	1.00
109247--109288	22	1.9	22	85	0	57	76	4	7	11	1.15
109827--109852	12	2.2	12	100	0	52	15	46	23	15	1.83
110569--110643	6	11.8	6	74	20	64	77	0	1	21	0.85
110579--110649	3	23.3	3	83	8	58	76	0	0	23	0.79
110572--110649	12	6.1	13	80	19	83	75	0	1	23	0.87
110572--110649	25	3.0	25	79	18	90	75	0	1	23	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110579--110649	21	3.5	21	72	18	69	76	0	0	23	0.79
110605--110647	4	10.5	4	80	14	52	79	0	0	20	0.74
110768--110930	27	6.1	27	73	13	115	47	4	6	41	1.50
110730--110863	65	2.1	64	83	10	166	50	5	3	41	1.43
110785--110903	40	3.1	39	89	3	177	47	5	5	42	1.50
110683--110994	104	3.0	104	85	8	363	47	5	4	42	1.46
110823--110968	67	2.2	64	90	4	229	47	4	6	41	1.49
110890--111035	37	3.7	38	80	10	161	46	6	5	41	1.52
111098--111130	4	8.2	4	100	0	66	75	0	0	24	0.80
114268--114338	2	35.5	2	97	0	133	49	0	1	49	1.09
115934--115971	16	2.3	16	90	4	58	26	7	26	39	1.83
122420--122453	2	17.0	2	87	0	50	44	0	5	50	1.26
125965--126023	8	6.9	8	81	14	73	74	0	11	13	1.07
127029--127366	55	6.1	55	92	1	543	29	14	27	27	1.95
129514--129542	2	14.5	2	100	0	58	48	0	0	51	1.00
130954--130993	13	2.9	15	85	10	50	72	0	0	27	0.85
130954--130992	20	1.9	21	94	5	71	71	0	0	28	0.86
132167--132206	21	1.9	21	89	0	62	40	7	15	37	1.75
135083--135124	13	2.9	15	75	13	52	42	16	7	33	1.75
135075--135117	13	3.2	13	75	12	50	46	11	4	37	1.61
135080--135128	15	3.4	15	77	11	66	42	16	6	34	1.73
135081--135146	28	2.3	28	82	7	71	45	13	9	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136490--136556	22	3.0	22	83	12	84	43	1	2	52	1.25
144317--144429	41	2.7	42	74	6	106	34	20	17	27	1.95
145210--145246	10	3.7	10	88	0	56	45	8	0	45	1.32
146821--146855	7	5.0	7	96	0	61	68	14	2	14	1.32
147287--147338	25	2.1	25	100	0	104	30	19	11	38	1.87
147852--147896	22	2.1	22	95	4	83	33	13	0	53	1.40
151618--151724	27	4.0	25	89	6	106	73	3	16	5	1.17
151614--151753	54	2.6	54	80	10	146	74	2	16	6	1.15
151632--151733	27	3.8	27	92	2	152	72	3	17	5	1.20
151632--151754	54	2.3	53	83	6	151	73	3	17	5	1.15
151759--151798	9	4.4	9	100	0	80	70	0	30	0	0.88
153845--154673	55	15.1	54	85	4	989	33	10	15	41	1.80
153845--154691	110	7.7	110	88	2	1109	33	10	15	40	1.80
154781--154883	42	2.5	41	80	13	106	26	23	18	32	1.97
156261--156769	139	3.7	138	84	6	579	36	16	20	26	1.93
156697--156759	18	3.2	20	64	28	53	46	9	19	25	1.80
160503--160826	81	4.0	80	83	2	371	29	22	11	36	1.90
160776--161167	68	5.8	68	90	0	577	30	23	14	31	1.94
161376--161587	55	3.8	55	86	3	275	33	19	11	35	1.87
166048--166228	81	2.2	81	83	6	215	28	24	10	36	1.89
166160--166292	70	1.9	70	89	3	205	31	24	10	33	1.89
166310--166701	68	5.8	68	86	2	545	30	23	14	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174893--175082	51	3.7	51	85	4	233	36	17	22	23	1.95
174893--175081	49	3.7	50	83	7	222	36	17	22	23	1.95
175883--175922	19	2.1	19	85	4	53	40	15	10	35	1.80
177311--177353	18	2.4	18	80	0	50	32	4	4	58	1.39
177288--177344	21	2.8	19	73	7	51	35	3	5	56	1.39
178955--179001	24	2.0	24	100	0	94	55	17	17	10	1.69
179968--180128	55	2.9	56	91	5	256	30	18	12	38	1.88
182305--182477	38	4.4	36	68	19	107	5	10	6	76	1.15
182265--182505	121	2.0	120	95	4	432	6	13	6	73	1.23
192065--192222	71	2.2	71	85	0	199	32	19	17	31	1.95

Tables:   1   2   3   4