genome.fa.s8448.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008448.1 Hibiscus syriacus cultivar Beakdansim tig00111253_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  805563

Tables:   1   2   3   4   

This is table  3  of  4  ( 382 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
520282--520569	49	6.0	49	85	4	399	24	20	15	39	1.92
520282--520553	92	2.9	92	87	3	382	24	20	16	38	1.93
520981--521019	19	2.1	19	85	4	53	17	17	20	43	1.88
528336--528379	22	2.0	21	83	12	54	9	15	0	75	1.05
528817--528861	3	14.7	3	90	4	72	35	0	0	64	0.94
528817--528860	22	2.0	22	95	0	79	34	0	0	65	0.93
531236--531273	19	2.1	19	90	5	60	26	2	5	65	1.27
533832--534188	64	5.6	64	86	1	475	36	19	13	30	1.91
533832--534188	126	2.8	128	83	1	484	36	19	13	30	1.91
533832--534184	190	1.9	191	86	3	514	36	19	13	30	1.90
534207--534714	121	4.2	122	86	4	721	36	25	15	22	1.94
534660--534767	32	3.3	32	73	10	119	35	28	12	24	1.91
534626--534741	34	3.5	34	70	10	105	39	26	11	22	1.88
534623--534780	66	2.4	66	93	1	264	37	25	13	24	1.91
535645--535686	3	13.7	3	90	5	66	38	0	0	61	0.96
537511--537561	25	2.0	26	84	3	68	11	15	0	72	1.12
537526--537581	26	2.1	27	83	3	69	16	10	1	71	1.22
538466--538518	26	2.0	26	100	0	106	39	7	11	41	1.69
540307--540418	59	1.9	59	85	3	154	34	15	15	34	1.89
542346--542477	51	2.6	51	81	3	167	53	12	7	27	1.65
542346--542502	51	3.1	51	76	10	160	51	12	9	26	1.69
542415--542572	82	1.9	82	85	5	221	48	14	11	25	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
542760--542787	12	2.3	12	100	0	56	57	0	0	42	0.99
543559--543592	14	2.4	14	85	0	50	41	29	8	20	1.82
548967--549027	31	1.9	32	86	3	88	27	13	11	47	1.77
556149--556286	61	2.2	64	84	5	174	27	27	18	26	1.98
558323--558368	22	2.0	22	83	4	56	56	10	8	23	1.61
561660--561831	88	2.0	87	89	4	265	37	11	6	44	1.66
569955--570064	24	4.6	24	79	6	107	43	17	15	23	1.87
571242--571276	18	1.9	18	88	0	52	28	17	0	54	1.43
571463--571501	19	2.1	19	95	0	69	20	25	5	48	1.70
572620--572662	18	2.4	18	96	0	77	11	20	48	18	1.79
574344--574410	21	3.2	21	84	0	89	34	10	28	26	1.90
579816--579848	17	1.9	17	88	11	50	63	0	3	33	1.10
584437--584462	13	2.0	13	100	0	52	30	7	15	46	1.74
586778--586835	24	2.5	23	71	15	64	56	1	8	32	1.40
586990--587520	131	4.1	131	79	5	513	30	17	19	31	1.95
586991--587494	259	1.9	261	82	2	620	30	17	20	31	1.96
588935--588975	21	2.0	21	85	9	57	9	14	0	75	1.04
617501--617546	21	2.2	21	96	0	83	34	41	8	15	1.78
619587--619611	12	2.1	12	100	0	50	24	32	8	36	1.84
630954--631022	23	3.0	23	80	0	84	31	23	24	20	1.98
640409--640440	2	16.0	2	100	0	64	50	0	0	50	1.00
647942--647992	22	2.3	22	93	0	84	23	13	41	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648165--648219	20	2.8	20	86	8	85	27	12	30	29	1.93
650436--650477	20	2.1	20	90	0	66	42	21	9	26	1.83
658907--658970	31	2.1	31	81	0	74	43	1	18	35	1.60
660715--660824	47	2.3	47	80	1	139	39	16	4	40	1.69
663962--664009	21	2.3	21	89	7	71	27	33	14	25	1.94
665130--665293	82	2.0	82	98	0	319	42	6	17	33	1.75
666506--666558	23	2.3	23	96	0	97	30	28	20	20	1.98
666477--666600	21	5.7	21	79	9	85	33	27	17	21	1.96
671206--671267	21	3.0	20	85	4	70	30	25	14	29	1.95
676092--676231	60	2.3	60	88	0	199	22	21	21	34	1.97
677616--677670	23	2.4	23	87	3	76	34	1	47	16	1.57
678849--678904	23	2.4	23	90	0	85	33	1	46	17	1.59
679551--679589	20	1.9	21	89	5	62	69	0	2	28	1.02
686676--686859	63	2.9	62	80	7	172	30	17	21	29	1.96
686849--686894	20	2.4	19	82	17	67	28	15	21	34	1.94
689453--689519	7	8.6	7	77	20	55	67	1	1	29	1.09
689452--689519	12	5.7	12	75	17	61	67	1	1	29	1.08
690051--690202	79	1.9	80	81	4	182	28	15	18	37	1.92
698650--698711	31	2.0	31	87	0	88	45	17	9	27	1.80
700811--700860	6	9.0	5	81	16	55	74	2	4	20	1.08
703184--703230	2	23.5	2	100	0	94	48	0	0	51	1.00
703216--703337	36	3.3	35	72	12	111	43	8	4	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
703308--703422	24	5.2	22	71	25	91	46	6	3	43	1.45
703315--703390	40	1.9	40	86	10	111	48	3	3	43	1.40
703355--703450	24	4.0	24	72	20	76	44	5	3	46	1.41
703783--703818	14	2.6	14	100	0	72	66	0	0	33	0.92
706172--706215	3	15.3	3	86	9	65	63	0	0	36	0.95
706172--706215	17	2.6	17	92	0	70	63	0	0	36	0.95
706173--706214	14	3.0	14	92	0	66	66	0	0	33	0.92
706172--706230	20	3.0	19	85	7	73	64	0	0	35	0.94
707414--707496	22	3.8	22	87	3	105	36	12	12	39	1.80
707857--708007	54	2.8	53	90	3	239	25	24	13	35	1.93
708384--708471	35	2.5	35	81	5	106	31	22	13	31	1.93
709571--709616	20	2.3	20	85	7	58	60	10	10	17	1.57
713618--713662	3	15.3	3	86	4	65	62	0	0	37	0.96
713620--713672	23	2.4	22	81	12	65	62	0	0	37	0.96
715342--715389	25	1.9	26	83	8	64	29	4	35	31	1.76
717069--717118	21	2.4	21	93	0	82	8	30	40	22	1.82
721324--721373	3	17.0	3	80	12	59	72	0	28	0	0.86
721332--721379	17	2.9	17	96	3	89	77	0	22	0	0.78
728483--728694	109	2.0	107	81	3	246	50	17	17	14	1.79
730154--730381	112	2.0	111	89	2	350	28	17	18	35	1.94
731717--731753	18	2.1	18	89	0	56	16	0	32	51	1.45
732705--733345	81	7.9	81	90	0	987	30	22	10	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
733823--734009	95	2.0	95	81	6	218	27	20	12	40	1.88
734552--734617	22	3.2	22	70	24	70	10	3	43	42	1.54
734546--734624	40	2.0	40	92	0	131	10	5	40	44	1.60
741355--741386	15	2.2	14	94	5	55	6	9	0	84	0.78
741356--741397	21	2.0	21	85	4	57	4	11	0	83	0.79
744746--745287	43	12.6	44	84	3	626	32	18	24	24	1.97
746133--746186	26	2.1	26	96	0	99	53	11	16	18	1.72
747766--747999	41	5.8	41	80	3	168	36	17	17	28	1.92
747810--748303	82	6.1	82	82	2	453	33	18	19	28	1.96
747771--748303	123	4.3	123	77	6	352	34	18	18	28	1.95
747845--748323	41	11.7	41	78	4	337	33	18	19	28	1.96
747810--748303	162	3.0	164	80	5	439	33	18	19	28	1.96
749811--749852	20	2.2	19	86	4	57	64	2	0	33	1.07
749720--749953	118	2.0	116	82	6	285	45	8	8	37	1.66
749998--750033	18	1.9	18	88	5	54	50	0	0	50	1.00
751814--752171	139	2.6	139	86	2	506	27	18	14	38	1.90
752240--752544	111	2.7	112	89	2	497	27	20	15	37	1.92
752639--752713	31	2.4	31	95	0	132	37	20	17	25	1.94
752550--753422	181	4.7	181	70	13	711	35	21	19	24	1.96
752670--753242	76	7.6	76	91	1	909	35	21	18	23	1.96
752670--753242	227	2.5	227	89	2	900	35	21	18	23	1.96
753204--753273	31	2.3	31	94	0	122	40	21	15	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
753128--753347	107	2.1	105	87	1	314	36	21	17	24	1.95
753230--753443	74	2.9	74	90	6	333	34	19	19	26	1.96
754282--754341	22	2.7	22	86	0	93	41	11	11	35	1.78
759091--759126	19	2.0	17	89	10	54	0	27	0	72	0.85
764217--764274	29	2.0	30	86	3	82	51	0	1	46	1.11
764330--764371	20	2.2	19	86	4	57	64	2	0	33	1.07
764243--764474	119	2.0	120	83	5	303	46	9	7	37	1.64
764563--764589	3	9.0	3	100	0	54	66	0	0	33	0.92
766053--766091	6	6.5	6	96	0	69	38	0	12	48	1.42
767077--767133	25	2.3	25	100	0	114	54	12	7	26	1.63

Tables:   1   2   3   4