genome.fa.s8448.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008448.1 Hibiscus syriacus cultivar Beakdansim tig00111253_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  805563

Tables:   1   2   3   4   

This is table  2  of  4  ( 382 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281903--282027	64	2.0	63	98	1	241	29	14	18	37	1.90
282169--282316	46	3.3	46	81	3	201	43	12	18	24	1.85
286491--286948	37	11.9	37	69	20	203	23	19	22	35	1.96
286498--286799	116	2.6	117	90	3	475	23	19	21	35	1.96
286637--286920	79	3.7	77	73	11	267	23	18	23	34	1.96
286599--286956	153	2.3	153	92	1	583	22	18	22	35	1.96
286753--287042	116	2.5	116	85	3	379	23	18	21	35	1.95
286498--287030	269	2.0	270	89	1	809	23	19	21	35	1.96
288201--288422	119	1.9	119	91	0	363	26	26	14	32	1.95
295780--295808	2	14.5	2	100	0	58	48	0	0	51	1.00
299077--299113	17	2.1	18	90	5	58	37	0	5	56	1.22
303572--303723	55	2.8	55	86	3	200	36	13	18	31	1.89
303901--304482	68	8.7	68	89	4	900	30	14	24	30	1.95
303938--304455	260	2.0	260	94	0	901	29	15	25	29	1.96
304432--304639	81	2.6	81	94	0	362	33	14	24	27	1.95
304604--304678	39	1.9	39	88	0	114	26	14	25	33	1.94
304523--304756	120	2.0	120	95	0	423	31	14	24	29	1.95
304643--305031	81	4.8	81	87	0	573	34	12	23	29	1.92
304439--305138	362	2.0	353	86	3	981	34	13	23	29	1.92
305000--305060	29	2.1	29	93	0	104	42	9	24	22	1.84
304919--305213	110	2.7	111	88	4	436	37	11	22	27	1.89
309331--309453	61	2.1	59	81	3	138	43	4	19	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318170--318208	21	2.0	20	85	10	53	12	23	38	25	1.90
320713--320771	20	2.9	20	80	9	66	11	25	37	25	1.90
326587--326682	22	4.4	22	91	0	156	18	22	41	16	1.90
326587--326682	44	2.2	44	96	0	174	18	22	41	16	1.90
327107--327159	20	2.7	20	96	0	97	35	5	22	35	1.78
327194--327240	20	2.3	20	82	7	51	29	21	25	23	1.99
329123--329173	26	2.0	26	84	3	68	31	9	9	49	1.69
330340--330465	32	3.9	31	72	10	83	46	22	11	19	1.83
330363--330411	16	3.1	16	72	0	53	46	28	8	16	1.75
330372--330434	16	3.9	16	69	8	56	49	26	9	14	1.74
330620--330688	32	2.2	32	81	0	75	40	18	11	28	1.86
330633--330719	32	2.7	32	87	3	113	39	22	12	25	1.90
332024--332085	27	2.4	26	91	5	99	37	0	3	59	1.13
332041--332097	27	2.1	27	83	0	69	49	0	3	47	1.18
334079--334111	15	2.3	15	89	5	50	15	12	0	72	1.12
334171--334320	73	2.1	73	100	0	300	24	10	27	38	1.88
351014--351074	24	2.5	24	91	0	104	29	26	21	22	1.99
354259--354305	17	2.8	17	81	12	69	65	8	8	17	1.44
354241--354305	34	1.9	34	87	0	94	63	7	7	21	1.47
359977--360640	54	12.4	54	86	3	892	32	17	20	29	1.96
365913--366699	54	14.6	54	85	2	954	32	16	18	32	1.94
368893--368959	17	3.2	21	67	32	54	20	0	4	74	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368899--368942	17	2.5	19	82	14	58	20	0	4	75	0.98
368903--368956	26	2.1	25	86	3	72	20	0	5	74	1.02
371302--371341	21	1.9	21	94	0	71	20	17	12	50	1.78
373276--373326	2	26.0	2	96	4	95	49	0	0	50	1.00
373681--373748	23	3.0	23	82	0	91	17	25	26	30	1.97
373870--373900	16	1.9	16	93	0	53	38	0	19	41	1.51
377452--377480	2	14.5	2	100	0	58	48	0	0	51	1.00
398180--398343	43	3.9	41	75	4	121	28	17	21	32	1.96
398508--398665	44	3.6	44	78	8	142	32	17	20	30	1.95
405090--405133	18	2.5	18	92	3	72	65	18	4	11	1.40
405445--405528	39	2.2	39	93	0	141	36	9	7	46	1.64
406751--406798	22	2.1	23	85	11	64	35	14	6	43	1.71
407467--407545	41	1.9	41	84	0	104	32	13	12	40	1.83
408026--408065	3	13.7	3	86	5	55	37	2	0	60	1.11
411669--411719	21	2.4	21	80	6	59	29	17	23	29	1.97
416049--416127	21	3.9	20	85	6	97	31	29	13	25	1.94
416049--416128	40	1.9	39	90	5	106	31	28	15	25	1.95
421507--421550	22	2.0	22	86	8	63	47	9	9	34	1.67
422427--422461	18	1.9	18	100	0	70	65	0	17	17	1.27
423074--423131	21	2.8	21	76	10	73	24	10	22	43	1.84
428784--428827	22	2.0	22	86	13	63	29	4	15	50	1.64
443010--443212	110	1.8	110	79	0	235	31	21	7	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443100--443499	81	4.9	81	87	0	548	30	22	12	34	1.91
443431--443704	68	4.0	68	88	0	370	28	25	15	30	1.96
443990--444151	60	2.7	59	85	2	200	35	18	10	35	1.85
444020--444151	59	2.2	58	86	4	156	35	20	12	31	1.89
444468--444662	95	2.1	95	84	1	248	26	22	15	34	1.94
458206--458259	16	3.1	17	72	17	56	24	27	18	29	1.98
458189--458259	36	2.0	36	83	5	90	25	26	19	28	1.99
458614--458682	34	2.1	34	86	2	95	37	15	23	23	1.93
459702--459903	82	2.5	81	83	1	251	36	21	18	23	1.95
459556--460038	218	2.2	216	84	3	605	34	20	18	25	1.96
459777--460159	135	2.8	135	82	4	439	34	19	19	25	1.96
459989--460094	55	1.9	55	82	0	131	32	19	17	30	1.96
461378--461566	93	2.0	93	97	0	360	31	5	18	44	1.72
462028--462067	20	2.0	20	90	0	62	37	12	27	22	1.90
462653--462926	44	6.0	44	76	12	266	41	11	23	22	1.87
462686--462789	55	1.9	55	89	0	163	41	13	25	20	1.88
462759--462923	85	1.9	85	87	2	242	42	10	23	23	1.85
465843--465886	18	2.5	17	81	3	52	31	13	9	45	1.75
465946--466016	17	4.1	17	88	1	97	36	14	8	40	1.76
470028--470077	17	2.9	17	78	0	55	34	18	6	42	1.74
474417--474459	13	3.3	13	100	0	86	76	0	23	0	0.78
477016--477080	20	3.2	20	69	16	60	21	21	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477317--477403	41	2.1	42	80	2	95	31	21	17	29	1.96
476792--482929	292	21.2	293	82	4	6683	30	15	19	34	1.92
478591--478746	58	2.7	56	77	8	154	31	12	20	35	1.89
482637--482753	59	2.1	55	83	6	144	37	11	15	35	1.83
482702--483151	242	1.8	248	83	5	612	32	14	19	33	1.92
482941--489492	292	22.6	292	77	8	5538	31	15	18	34	1.92
483894--483932	20	2.0	20	94	0	69	25	30	17	25	1.97
482941--495377	878	14.2	865	71	13	4912	31	15	18	34	1.92
485988--486038	21	2.5	21	77	3	59	27	15	21	35	1.94
486536--486631	42	2.3	42	75	12	99	30	21	19	28	1.98
487112--487231	42	2.9	42	87	2	161	23	22	20	33	1.97
489420--489528	42	2.6	42	88	0	155	24	23	17	33	1.96
489462--508739	293	64.4	292	69	14	5912	30	16	18	34	1.93
487586--489497	581	3.3	584	83	3	2154	30	15	19	34	1.93
491798--491906	42	2.6	42	88	0	155	24	23	17	33	1.96
496239--496374	55	2.5	54	74	8	123	33	12	16	37	1.87
497347--497451	56	1.9	55	86	9	151	33	12	17	37	1.87
495427--499106	558	6.6	564	80	9	3838	31	15	18	34	1.92
499742--499901	59	2.7	60	80	1	151	27	27	16	28	1.97
500243--500280	20	1.9	19	89	5	58	28	26	15	28	1.96
501543--501699	59	2.6	59	80	5	163	28	27	15	29	1.96
502043--502080	20	1.9	19	89	5	58	28	26	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500057--508723	293	29.0	291	75	10	6637	30	16	18	34	1.93
503342--503499	59	2.7	59	79	4	156	27	28	15	28	1.96
503842--503879	20	1.9	19	89	5	58	28	26	15	28	1.96
503910--505125	585	2.1	584	87	2	1701	31	15	18	34	1.92
506940--507067	59	2.2	59	84	2	159	27	26	14	32	1.94
508032--508131	42	2.4	42	80	5	114	29	20	20	31	1.97
508738--508865	59	2.2	59	85	0	166	27	26	14	31	1.95
509238--509275	20	1.9	19	89	5	58	28	26	15	28	1.96
509689--509808	61	2.0	61	94	0	213	35	25	11	27	1.91
513234--513576	49	7.0	49	88	2	492	24	19	15	40	1.90

Tables:   1   2   3   4