genome.fa.s8448.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008448.1 Hibiscus syriacus cultivar Beakdansim tig00111253_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  805563

Tables:   1   2   3   4   

This is table  4  of  4  ( 382 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
767657--767727	32	2.2	32	90	5	108	36	23	11	28	1.89
767669--767735	32	2.1	32	97	0	125	31	23	11	32	1.91
770701--770739	17	2.2	18	86	4	53	38	10	12	38	1.78
772335--772450	24	4.8	24	86	6	146	24	15	18	41	1.89
774538--774578	18	2.3	18	100	0	82	17	51	21	9	1.74
774565--774626	8	7.5	8	77	14	56	17	33	24	24	1.96
774568--774616	15	3.1	15	82	5	62	16	34	24	24	1.95
777070--777185	24	4.8	24	85	6	146	24	16	18	41	1.90
777122--777195	24	3.1	24	86	3	78	22	16	17	43	1.88
779803--780229	85	5.0	84	80	7	479	28	18	18	34	1.95
781543--781741	99	2.0	98	87	6	287	31	17	16	34	1.92
782225--782300	35	2.2	35	80	4	82	60	5	13	21	1.52
784314--784702	45	8.6	45	81	2	363	30	20	9	39	1.85
785271--785304	14	2.4	14	85	0	50	26	11	23	38	1.89
788690--788767	3	25.3	3	77	14	52	67	5	1	25	1.18
788701--788738	16	2.5	15	84	16	51	71	2	2	23	1.12
788772--788815	22	2.0	23	86	4	63	54	9	0	36	1.32
788803--788861	12	5.0	12	73	8	50	47	5	1	45	1.34
788777--789163	35	10.9	35	79	13	379	44	7	3	44	1.47
788776--789200	71	5.9	71	80	13	409	44	7	3	44	1.47
792077--792292	107	2.0	106	96	0	396	25	13	23	37	1.91
792819--792850	14	2.3	14	100	0	64	25	9	25	40	1.85

Tables:   1   2   3   4

The End!